Annotations: 9C4D

The structure of 4 MntR homodimers bound to the promoter sequence of mnep

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J	SCOP2B Superfamily	Winged helix DNA-binding domain	8058120	3000034	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	DtxR dimerization domain-like	8058121	3000063	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	DtxR dimerization domain-like	8058121	3000063	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Winged helix DNA-binding domain	8058120	3000034	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	DtxR dimerization domain-like	8058121	3000063	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Winged helix DNA-binding domain	8058120	3000034	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Winged helix DNA-binding domain	8058120	3000034	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	DtxR dimerization domain-like	8058121	3000063	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Winged helix DNA-binding domain	8058120	3000034	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	DtxR dimerization domain-like	8058121	3000063	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	DtxR dimerization domain-like	8058121	3000063	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Winged helix DNA-binding domain	8058120	3000034	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	DtxR dimerization domain-like	8058121	3000063	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Winged helix DNA-binding domain	8058120	3000034	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	DtxR dimerization domain-like	8058121	3000063	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Winged helix DNA-binding domain	8058120	3000034	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J	Reovirus_L2_GTase	e9c4dJ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Reovirus_L2_GTase	ECOD (v295)
I	Reovirus_L2_GTase	e9c4dI1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Reovirus_L2_GTase	ECOD (v295)
H	Reovirus_L2_GTase	e9c4dH1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Reovirus_L2_GTase	ECOD (v295)
G	Reovirus_L2_GTase	e9c4dG1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Reovirus_L2_GTase	ECOD (v295)
F	Reovirus_L2_GTase	e9c4dF1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Reovirus_L2_GTase	ECOD (v295)
E	Reovirus_L2_GTase	e9c4dE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Reovirus_L2_GTase	ECOD (v295)
D	Reovirus_L2_GTase	e9c4dD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Reovirus_L2_GTase	ECOD (v295)
C	Reovirus_L2_GTase	e9c4dC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Reovirus_L2_GTase	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C, D, E, F, G C, D, E, F, G, H, I, J	PF02742	Iron dependent repressor, metal binding and dimerisation domain (Fe_dep_repr_C)	Iron dependent repressor, metal binding and dimerisation domain	This family includes the Diphtheria toxin repressor [1]. It acts as an iron-binding repressor of diphtheria toxin gene expression and may serve as a global regulator of gene expression. DTXR comprises an N-terminal DNA-binding domain, an interface do ...	This family includes the Diphtheria toxin repressor [1]. It acts as an iron-binding repressor of diphtheria toxin gene expression and may serve as a global regulator of gene expression. DTXR comprises an N-terminal DNA-binding domain, an interface domain (which contains two metal-binding sites) and a third, very flexible C-terminal domain. The second domain is responsible for dimerization and metal binding. Binding of DTXR to Tox operator requires a divalent metal ion such as cobalt, ferric, manganese and nickel whereas zinc shows weak activation [2]. This domain can also bind Cd(II), Ca(II) and Cu(II) (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D, E, F, G C, D, E, F, G, H, I, J	HTH-type transcriptional regulator MntR	DNA binding binding nucleic acid binding cation binding manganese ion binding transition metal ion binding ion binding metal ion binding small molecule binding transcription regulator activity DNA-binding transcription factor activity protein binding protein dimerization activity	inorganic ion homeostasis homeostatic process manganese ion homeostasis intracellular manganese ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process inorganic ion homeostasis homeostatic process manganese ion homeostasis intracellular manganese ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm
B	DNA (77-MER)	-	-	-
A	DNA (77-MER)	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D, E, F, G C, D, E, F, G, H, I, J	IPR036421	Iron dependent repressor, metal binding and dimerisation domain superfamily	Homologous Superfamily
C, D, E, F, G C, D, E, F, G, H, I, J	IPR050536	DtxR_MntR_Metal-Reg	Unknown
C, D, E, F, G C, D, E, F, G, H, I, J	IPR022897	HTH-type transcription regulator MntR	Family
C, D, E, F, G C, D, E, F, G, H, I, J	IPR022689	Iron dependent repressor	Family
C, D, E, F, G C, D, E, F, G, H, I, J	IPR001367	Iron dependent repressor, metal binding and dimerisation domain	Domain
C, D, E, F, G C, D, E, F, G, H, I, J	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
C, D, E, F, G C, D, E, F, G, H, I, J	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
C, D, E, F, G C, D, E, F, G, H, I, J	IPR022687	DTXR-type, HTH domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.