9BZL | pdb_00009bzl

Targeting N-Myc in Neuroblastoma with Selective Aurora Kinase A Degraders

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth B]	SCOP2B Superfamily	Protein kinase-like (PK-like)	8042948	3000066	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B]	PF00069	Protein kinase domain (Pkinase)	Protein kinase domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B]	Aurora kinase A	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups ubiquitin protein ligase binding protein binding ubiquitin-like protein ligase binding enzyme binding protein serine/threonine/tyrosine kinase activity protein heterodimerization activity protein dimerization activity protein serine kinase activity kinase binding protein kinase binding protein serine/threonine kinase activity molecular function activator activity molecular function regulator activity histone H3 kinase activity histone modifying activity histone H3S10 kinase activity histone kinase activity	regulation of protein binding regulation of molecular function negative regulation of protein binding regulation of binding negative regulation of binding biological regulation negative regulation of molecular function localization centrosome localization microtubule organizing center localization cellular process cell division apoptotic process cell death regulation of protein binding regulation of molecular function negative regulation of protein binding regulation of binding negative regulation of binding biological regulation negative regulation of molecular function localization centrosome localization microtubule organizing center localization cellular process cell division apoptotic process cell death programmed cell death positive regulation of proteasomal protein catabolic process regulation of cellular process catabolic process positive regulation of protein metabolic process proteolysis involved in protein catabolic process positive regulation of biological process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process regulation of ubiquitin-dependent protein catabolic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of ubiquitin-dependent protein catabolic process regulation of proteolysis regulation of proteolysis involved in protein catabolic process modification-dependent macromolecule catabolic process proteolysis positive regulation of macromolecule metabolic process protein metabolic process positive regulation of cellular process regulation of biological process regulation of protein metabolic process primary metabolic process proteasomal protein catabolic process regulation of macromolecule metabolic process protein catabolic process regulation of catabolic process positive regulation of protein catabolic process positive regulation of proteolysis involved in protein catabolic process positive regulation of catabolic process regulation of proteasomal ubiquitin-dependent protein catabolic process modification-dependent protein catabolic process positive regulation of proteolysis regulation of proteasomal protein catabolic process positive regulation of proteasomal ubiquitin-dependent protein catabolic process metabolic process ubiquitin-dependent protein catabolic process macromolecule metabolic process regulation of metabolic process regulation of protein catabolic process positive regulation of organelle organization regulation of cellular component organization positive regulation of cellular component organization regulation of mitotic nuclear division positive regulation of mitotic nuclear division mitotic cell cycle cellular component organization regulation of mitotic cell cycle positive regulation of cell cycle process cellular component organization or biogenesis cell cycle regulation of cell cycle cell cycle process mitotic nuclear division regulation of cell cycle process organelle fission positive regulation of nuclear division regulation of organelle organization positive regulation of cell cycle organelle organization nuclear division mitotic cell cycle process regulation of nuclear division protein phosphorylation protein autophosphorylation phosphorylation macromolecule modification phosphate-containing compound metabolic process protein modification process phosphorus metabolic process regulation of cytokinesis cytokinesis regulation of cell division regulation of protein stability regulation of biological quality response to stimulus response to stress response to wounding cell cycle G2/M phase transition regulation of cell cycle phase transition regulation of G2/M transition of mitotic cell cycle G2/M transition of mitotic cell cycle regulation of cell cycle G2/M phase transition cell cycle phase transition regulation of mitotic cell cycle phase transition mitotic cell cycle phase transition peptidyl-serine modification peptidyl-serine phosphorylation peptidyl-amino acid modification cellular component disassembly plasma membrane bounded cell projection organization organelle disassembly cell projection organization cilium disassembly cilium organization protein localization to microtubule cytoskeleton protein localization to cytoskeleton protein localization to organelle macromolecule localization protein localization to microtubule organizing center intracellular protein localization protein localization to centrosome negative regulation of programmed cell death regulation of apoptotic process negative regulation of biological process regulation of programmed cell death negative regulation of apoptotic process negative regulation of cellular process meiotic chromosome segregation sexual reproduction reproductive process microtubule cytoskeleton organization membraneless organelle assembly female gamete generation meiotic cell cycle process gamete generation cellular component biogenesis cellular component assembly meiosis I female meiotic nuclear division spindle assembly involved in female meiosis I meiotic nuclear division chromosome segregation spindle organization organelle assembly meiotic cell cycle multicellular organismal reproductive process meiotic spindle organization meiotic spindle assembly spindle assembly meiosis I cell cycle process female meiosis I nuclear chromosome segregation microtubule-based process cytoskeleton organization spindle assembly involved in female meiosis multicellular organismal process cellular developmental process developmental growth plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell growth cell morphogenesis neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development system development developmental process neuron projection extension developmental cell growth growth nervous system development developmental growth involved in morphogenesis generation of neurons anatomical structure morphogenesis neuron development gland development animal organ development animal organ regeneration liver development regeneration hepaticobiliary system development liver regeneration anterior/posterior axis specification anterior/posterior pattern specification pattern specification process axis specification regionalization regulation of developmental process positive regulation of developmental process regulation of anatomical structure morphogenesis mitochondrion organization mitochondrial fission regulation of mitochondrial fission regulation of mitochondrion organization positive regulation of mitochondrial fission microtubule organizing center organization regulation of centrosome cycle regulation of microtubule-based process centrosome cycle mitotic spindle organization microtubule cytoskeleton organization involved in mitosis cellular response to stimulus regulation of signaling signaling regulation of signal transduction signal transduction by p53 class mediator intracellular signal transduction cell communication regulation of intracellular signal transduction regulation of response to stimulus regulation of signal transduction by p53 class mediator regulation of cell communication signal transduction positive regulation of oocyte maturation regulation of reproductive process regulation of oocyte maturation cellular process involved in reproduction in multicellular organism regulation of cell differentiation positive regulation of cell maturation developmental process involved in reproduction regulation of cell development oocyte development positive regulation of cell differentiation cell maturation regulation of cell maturation positive regulation of reproductive process oogenesis positive regulation of cell development developmental maturation anatomical structure maturation germ cell development oocyte maturation oocyte differentiation regulation of biosynthetic process negative regulation of metabolic process gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process negative regulation of macromolecule metabolic process positive regulation of mitotic cell cycle centrosome separation mitotic centrosome separation	intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton spindle midzone cytoplasm cytosol cell periphery intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton spindle midzone cytoplasm cytosol cell periphery basal part of cell membrane plasma membrane basal plasma membrane plasma membrane region basolateral plasma membrane synapse cell junction glutamatergic synapse perinuclear region of cytoplasm mitotic spindle mitotic spindle pole membrane-bounded organelle cilium plasma membrane bounded cell projection ciliary basal body cell projection microtubule organizing center polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex midbody nucleus germinal vesicle germ cell nucleus intracellular membrane-bounded organelle female germ cell nucleus centrosome centriole somatodendritic compartment axon cell body neuron projection neuronal cell body axon hillock membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen protein-containing complex chromosome passenger complex microtubule associated complex chromosome chromosomal region kinetochore chromosome, centromeric region condensed chromosome, centromeric region condensed chromosome spindle pole centrosome pronucleus postsynaptic density postsynapse neuron to neuron synapse postsynaptic specialization asymmetric synapse meiotic spindle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B]	IPR000719	Protein kinase domain	Domain
A [auth B]	IPR017441	Protein kinase, ATP binding site	Binding Site
A [auth B]	IPR030616	Aurora kinase-like	Family
A [auth B]	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A [auth B]	IPR030611	Aurora kinase A	Domain
A [auth B]	IPR008271	Serine/threonine-protein kinase, active site	Active Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth B]	Pharos: O14965	cancer colorectal cancer breast carcinoma melanoma neuroblastoma peripheral neuropathy prostate cancer aneuploidy breast cancer Chromosomal Instability kidney cancer peripheral nervous system disease psoriasis interstitial cystitis kidney neoplasm cancer colorectal cancer breast carcinoma melanoma neuroblastoma peripheral neuropathy prostate cancer aneuploidy breast cancer Chromosomal Instability kidney cancer peripheral nervous system disease psoriasis interstitial cystitis kidney neoplasm lung cancer malignant glioma adrenal cortex carcinoma malignant pancreatic neoplasm atypical teratoid rhabdoid tumor metastatic melanoma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma cutaneous lupus erythematosus endometriosis hepatocellular carcinoma thrombocytopenia due to immune destruction invasive ductal breast carcinoma large cell medulloblastoma malignant colon neoplasm medulloblastoma nasopharyngeal carcinoma osteosarcoma colorectal carcinoma pancreatic intraductal papillary-mucinous neoplasm cutaneous melanoma primitive neuroectodermal tumor esophageal adenocarcinoma IgA glomerulonephritis lung adenocarcinoma malignant ependymoma atopic eczema colorectal adenocarcinoma ovarian cancer ductal breast carcinoma in situ prostate adenocarcinoma glioblastoma

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A [auth B]	TPO	Parent Component: THR RESID: AA0038 PSI-MOD : O-phospho-L-threonine MOD:00047

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.