Single particle CryoEM structure of the Pf80S ribosome in the rotated-2 PRE state (rt state with P and E-site tRNA)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| I [auth A6] | SCOP2B Superfamily | L30e-like | 8077495 | 3001739 | SCOP2B (2022-06-29) |
| H [auth A4] | SCOP2B Superfamily | Ribosomal protein L29e | 8053042 | 3002157 | SCOP2B (2022-06-29) |
| ZB [auth SZ] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053137 | 3000068 | SCOP2B (2022-06-29) |
| VB [auth SV] | SCOP2B Superfamily | Ribosomal S17 N-terminal domain-like | 8052724 | 3002138 | SCOP2B (2022-06-29) |
| VB [auth SV] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052726 | 3000135 | SCOP2B (2022-06-29) |
| UB [auth SU] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8052965 | 3001284 | SCOP2B (2022-06-29) |
| UB [auth SU] | SCOP2B Superfamily | Homeodomain-like | 8052964 | 3000001 | SCOP2B (2022-06-29) |
| TB [auth ST] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052571 | 3000068 | SCOP2B (2022-06-29) |
| SB [auth SS] | SCOP2B Superfamily | S13-like H2TH domain | 8100146 | 3000053 | SCOP2B (2022-06-29) |
| RB [auth SR] | SCOP2B Superfamily | L30e-like | 8063972 | 3001739 | SCOP2B (2022-06-29) |
| OB [auth SO] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8055711 | 3000034 | SCOP2B (2022-06-29) |
| NB [auth SN] | SCOP2B Superfamily | Ribosomal protein S10 | 8100154 | 3001336 | SCOP2B (2022-06-29) |
| MB [auth SM] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082679 | 3000100 | SCOP2B (2022-06-29) |
| KB [auth SK] | SCOP2B Superfamily | Ribosomal protein S8 | 8081977 | 3000709 | SCOP2B (2022-06-29) |
| IB [auth SI] | SCOP2B Superfamily | Ribosomal protein S7 | 8066011 | 3000799 | SCOP2B (2022-06-29) |
| HB [auth SH] | SCOP2B Superfamily | GS N-terminal domain-like | 8053165 | 3000408 | SCOP2B (2022-06-29) |
| F [auth A1] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053055 | 3000334 | SCOP2B (2022-06-29) |
| FB [auth SF] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8052750 | 3000334 | SCOP2B (2022-06-29) |
| FB [auth SF] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8052748 | 3001473 | SCOP2B (2022-06-29) |
| FB [auth SF] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052749 | 3000135 | SCOP2B (2022-06-29) |
| CB [auth SC] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063816 | 3001397 | SCOP2B (2022-06-29) |
| BB [auth SB] | SCOP2B Superfamily | Ribosomal S3Ae-like | 8053207 | 3002166 | SCOP2B (2022-06-29) |
| ZA [auth S6] | SCOP2B Superfamily | Ribosomal protein S30e-like | 8053452 | 3002190 | SCOP2B (2022-06-29) |
| YA [auth S5] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8063420 | 3000135 | SCOP2B (2022-06-29) |
| E [auth AL] | SCOP2B Superfamily | Ribosomal protein L13e-like | 8053153 | 3002162 | SCOP2B (2022-06-29) |
| WA [auth S3] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053146 | 3000068 | SCOP2B (2022-06-29) |
| SA [auth AX] | SCOP2B Superfamily | 60S Ribosomal protein L22e | 8053062 | 3002158 | SCOP2B (2022-06-29) |
| MA [auth AF] | SCOP2B Superfamily | 60S ribosomal protein L4 C-terminal domain-like | 8052822 | 3002143 | SCOP2B (2022-06-29) |
| MA [auth AF] | SCOP2B Superfamily | Ribosomal protein L4 | 8052823 | 3001146 | SCOP2B (2022-06-29) |
| LA [auth AE] | SCOP2B Superfamily | Translational proteins | 8078355 | 3000811 | SCOP2B (2022-06-29) |
| JA [auth A5] | SCOP2B Superfamily | Ribosomal L30p/L7e protein, N-terminal domain-lke | 8052931 | 3002152 | SCOP2B (2022-06-29) |
| JA [auth A5] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8052932 | 3001378 | SCOP2B (2022-06-29) |
| HA [auth AZ] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8076764 | 3000334 | SCOP2B (2022-06-29) |
| FA [auth AY] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8095963 | 3000210 | SCOP2B (2022-06-29) |
| EA [auth AW] | SCOP2B Superfamily | Ribosomal protein L22 | 8076716 | 3001078 | SCOP2B (2022-06-29) |
| DA [auth AR] | SCOP2B Superfamily | Translational machinery components | 8052890 | 3000571 | SCOP2B (2022-06-29) |
| CA [auth AQ] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8100158 | 3000884 | SCOP2B (2022-06-29) |
| BA [auth AO] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8077125 | 3001045 | SCOP2B (2022-06-29) |
| AA [auth AS] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8095974 | 3001045 | SCOP2B (2022-06-29) |
| Z [auth AM] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8072060 | 3000433 | SCOP2B (2022-06-29) |
| V [auth AI] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053098 | 3000334 | SCOP2B (2022-06-29) |
| V [auth AI] | SCOP2B Superfamily | Ribosomal protein L6e, N-terminal domain | 8053097 | 3002160 | SCOP2B (2022-06-29) |
| T [auth Ah] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8098254 | 3001320 | SCOP2B (2022-06-29) |
| S [auth AP] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8082473 | 3000210 | SCOP2B (2022-06-29) |
| R [auth Af] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8101707 | 3001320 | SCOP2B (2022-06-29) |
| P [auth Ad] | SCOP2B Superfamily | Ribosomal L38e protein-like | 8053570 | 3002206 | SCOP2B (2022-06-29) |
| O [auth Ab] | SCOP2B Superfamily | Ribosomal protein L36e | 8053116 | 3002161 | SCOP2B (2022-06-29) |
| N [auth Aa] | SCOP2B Superfamily | Ribosomal protein L34e-like | 8053541 | 3002203 | SCOP2B (2022-06-29) |
| M [auth A9] | SCOP2B Superfamily | Translational proteins | 8087449 | 3000811 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth A6] | WD40 | e9butA61 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| H [auth A4] | WD40 | e9butA41 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| ZB [auth SZ] | WD40 | e9butSZ1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| YB [auth SY] | WD40 | e9butSY1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| XB [auth SX] | WD40 | e9butSX1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| WB [auth SW] | WD40 | e9butSW1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| VB [auth SV] | WD40 | e9butSV1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| UB [auth SU] | WD40 | e9butSU1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| TB [auth ST] | WD40 | e9butST1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| SB [auth SS] | WD40 | e9butSS1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| RB [auth SR] | WD40 | e9butSR1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| G [auth A2] | WD40 | e9butA21 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| QB [auth SQ] | WD40 | e9butSQ1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| PB [auth SP] | WD40 | e9butSP1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| OB [auth SO] | WD40 | e9butSO1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| NB [auth SN] | WD40 | e9butSN1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| MB [auth SM] | WD40 | e9butSM1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| LB [auth SL] | WD40 | e9butSL1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| KB [auth SK] | WD40 | e9butSK1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| JB [auth SJ] | WD40 | e9butSJ1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| IB [auth SI] | WD40 | e9butSI1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| HB [auth SH] | WD40 | e9butSH1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| F [auth A1] | WD40 | e9butA11 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| GB [auth SG] | WD40 | e9butSG1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| FB [auth SF] | WD40 | e9butSF1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| EB [auth SE] | WD40 | e9butSE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| DB [auth SD] | WD40 | e9butSD2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| CB [auth SC] | WD40 | e9butSC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| BB [auth SB] | WD40 | e9butSB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| ZA [auth S6] | WD40 | e9butS61 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| YA [auth S5] | WD40 | e9butS51 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| XA [auth S4] | WD40 | e9butS41 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| E [auth AL] | WD40 | e9butAL1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| WA [auth S3] | WD40 | e9butS31 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| VA [auth S2] | WD40 | e9butS21 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| UA [auth S1] | WD40 | e9butS11 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| TA [auth A0] | WD40 | e9butA01 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| SA [auth AX] | WD40 | e9butAX1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| RA [auth Ag] | WD40 | e9butAg1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| QA [auth AV] | WD40 | e9butAV1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| PA [auth AH] | WD40 | e9butAH1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| OA [auth AU] | WD40 | e9butAU1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| NA [auth AG] | WD40 | e9butAG1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| MA [auth AF] | WD40 | e9butAF1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| LA [auth AE] | WD40 | e9butAE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| KA [auth AD] | WD40 | e9butAD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| JA [auth A5] | WD40 | e9butA51 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| IA [auth A3] | WD40 | e9butA31 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| HA [auth AZ] | WD40 | e9butAZ1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| GA [auth AT] | WD40 | e9butAT1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| FA [auth AY] | WD40 | e9butAY1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| DA [auth AR] | WD40 | e9butAR1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| CA [auth AQ] | WD40 | e9butAQ1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| BA [auth AO] | WD40 | e9butAO1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| AA [auth AS] | WD40 | e9butAS1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| Z [auth AM] | WD40 | e9butAM1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| Y [auth AK] | WD40 | e9butAK1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| X [auth Ac] | WD40 | e9butAc1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| W [auth AJ] | WD40 | e9butAJ1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| V [auth AI] | WD40 | e9butAI1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| U [auth Ai] | WD40 | e9butAi1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| T [auth Ah] | WD40 | e9butAh1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| S [auth AP] | WD40 | e9butAP1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| R [auth Af] | WD40 | e9butAf1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| Q [auth Ae] | WD40 | e9butAe1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| P [auth Ad] | WD40 | e9butAd1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| O [auth Ab] | WD40 | e9butAb1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| N [auth Aa] | WD40 | e9butAa1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| M [auth A9] | WD40 | e9butA91 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| L [auth A8] | WD40 | e9butA81 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| K [auth AN] | WD40 | e9butAN1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| J [auth A7] | WD40 | e9butA71 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| I [auth A6] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| H [auth A4] | PF01779 | Ribosomal L29e protein family (Ribosomal_L29e) | Ribosomal L29e protein family | - | Family |
| YB [auth SY] | PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family |
| XB [auth SX] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
| VB [auth SV] | PF16205 | Ribosomal_S17 N-terminal (Ribosomal_S17_N) | Ribosomal_S17 N-terminal | - | Family |
| VB [auth SV] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| UB [auth SU] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| SB [auth SS] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
| RB [auth SR] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| G [auth A2] | PF01778 | Ribosomal L28e protein family (Ribosomal_L28e) | Ribosomal L28e protein family | - | Family |
| QB [auth SQ] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| PB [auth SP] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| OB [auth SO] | PF03501 | Plectin/S10 domain (S10_plectin) | Plectin/S10 domain | This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. | Domain |
| MB [auth SM] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| LB [auth SL] | PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family |
| KB [auth SK] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | |
| JB [auth SJ] | PF01251 | Ribosomal protein S7e (Ribosomal_S7e) | Ribosomal protein S7e | - | Family |
| IB [auth SI] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| HB [auth SH] | PF01092 | Ribosomal protein S6e (Ribosomal_S6e) | Ribosomal protein S6e | - | Family |
| F [auth A1] | PF01777 | Ribosomal L27e protein family (Ribosomal_L27e) | Ribosomal L27e protein family | - | Family |
| GB [auth SG] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
| GB [auth SG] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
| FB [auth SF] | PF00900 | Ribosomal family S4e (Ribosomal_S4e) | Ribosomal family S4e | - | Family |
| FB [auth SF] | PF16121 | 40S ribosomal protein S4 C-terminus (40S_S4_C) | 40S ribosomal protein S4 C-terminus | - | Family |
| FB [auth SF] | PF08071 | RS4NT (NUC023) domain (RS4NT) | RS4NT (NUC023) domain | This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. | Domain |
| FB [auth SF] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| EB [auth SE] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
| EB [auth SE] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| DB [auth SD] | PF07650 | KH domain (KH_2) | KH domain | Domain | |
| DB [auth SD] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| CB [auth SC] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| YA [auth S5] | PF01200 | Ribosomal protein S28e (Ribosomal_S28e) | Ribosomal protein S28e | Domain | |
| XA [auth S4] | PF01667 | Ribosomal protein S27 (Ribosomal_S27e) | Ribosomal protein S27 | - | Family |
| E [auth AL] | PF01294 | Ribosomal protein L13e (Ribosomal_L13e) | Ribosomal protein L13e | - | Family |
| UA [auth S1] | PF01282 | Ribosomal protein S24e (Ribosomal_S24e) | Ribosomal protein S24e | - | Family |
| TA [auth A0] | PF01246 | Ribosomal protein L24e (Ribosomal_L24e) | Ribosomal protein L24e | Domain | |
| PA [auth AH] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
| PA [auth AH] | PF01780 | Ribosomal L37ae protein family (Ribosomal_L37ae) | Ribosomal L37ae protein family | - | Family |
| OA [auth AU] | PF01775 | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. | Domain |
| NA [auth AG] | PF05162 | Ribosomal protein L41 (Ribosomal_L41) | Ribosomal protein L41 | - | Family |
| NA [auth AG] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| D [auth AB] | PF01158 | Ribosomal protein L36e (Ribosomal_L36e) | Ribosomal protein L36e | - | Family |
| MA [auth AF] | PF01020 | Ribosomal L40e family (Ribosomal_L40e) | Ribosomal L40e family | Bovine L40 has been identified as a secondary RNA binding protein [1]. L40 is fused to a ubiquitin protein [2]. | Domain |
| MA [auth AF] | PF14374 | 60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C) | 60S ribosomal protein L4 C-terminal domain | This family is found at the very C-terminal of 60 ribosomal L4 proteins. | Domain |
| MA [auth AF] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| LA [auth AE] | PF00832 | Ribosomal L39 protein (Ribosomal_L39) | Ribosomal L39 protein | - | Family |
| KA [auth AD] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| KA [auth AD] | PF01781 | Ribosomal L38e protein family (Ribosomal_L38e) | Ribosomal L38e protein family | - | Family |
| JA [auth A5] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| IA [auth A3] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| HA [auth AZ] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
| HA [auth AZ] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| GA [auth AT] | PF01280 | Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e) | Ribosomal protein L19e, N-terminal domain | This domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
| GA [auth AT] | PF25476 | Ribosomal protein L19e, C-terminal domain (Ribosomal_L19e_C) | Ribosomal protein L19e, C-terminal domain | This domain is found at the C-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
| FA [auth AY] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| EA [auth AW] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| DA [auth AR] | PF17144 | Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) | Ribosomal large subunit proteins 60S L5, and 50S L18 | - | Family |
| DA [auth AR] | PF14204 | Ribosomal L18 C-terminal region (Ribosomal_L18_c) | Ribosomal L18 C-terminal region | This domain is the C-terminal end of ribosomal L18/L5 proteins. | Domain |
| C [auth AC] | PF01907 | Ribosomal protein L37e (Ribosomal_L37e) | Ribosomal protein L37e | - | Family |
| CA [auth AQ] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
| BA [auth AO] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| AA [auth AS] | PF17135 | Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18) | Ribosomal protein 60S L18 and 50S L18e | - | Family |
| Z [auth AM] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| Y [auth AK] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| V [auth AI] | PF00935 | Ribosomal protein L44 (Ribosomal_L44) | Ribosomal protein L44 | - | Family |
| V [auth AI] | PF01159 | Ribosomal protein L6e (Ribosomal_L6e) | Ribosomal protein L6e | - | Family |
| S [auth AP] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
| M [auth A9] | PF01247 | Ribosomal protein L35Ae (Ribosomal_L35Ae) | Ribosomal protein L35Ae | This entry represents the ribosomal eL33 previously known as L35A, eukaryotic and archaebacterial ribosomal proteins. | Domain |
| L [auth A8] | PF01655 | Ribosomal protein L32 (Ribosomal_L32e) | Ribosomal protein L32 | - | Family |
| K [auth AN] | PF01929 | Ribosomal protein L14 (Ribosomal_L14e) | Ribosomal protein L14 | - | Family |














