9B64 | pdb_00009b64

GluA2 flip Q in complex with TARPgamma2 at pH5, class23, structure of LBD-TMD-TARPgamma2

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth D]SCOP2B SuperfamilyType 2 solute binding protein-like 8036483 3000083 SCOP2B (2022-06-29)
E [auth A]SCOP2B SuperfamilyType 2 solute binding protein-like 8036483 3000083 SCOP2B (2022-06-29)
D [auth B]SCOP2B SuperfamilyType 2 solute binding protein-like 8036483 3000083 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyType 2 solute binding protein-like 8036483 3000083 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
H [auth G]WD40e9b64G1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
G [auth E]WD40e9b64E1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
B [auth F]WD40e9b64F1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
A [auth H]WD40e9b64H1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
F [auth D]WD40e9b64D1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
E [auth A]WD40e9b64A1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
D [auth B]WD40e9b64B1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
CWD40e9b64C1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth H],
B [auth F],
G [auth E],
H [auth G]		PF00822PMP-22/EMP/MP20/Claudin family (PMP22_Claudin)PMP-22/EMP/MP20/Claudin family- Family
C,
D [auth B],
E [auth A],
F [auth D]		PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
C,
D [auth B],
E [auth A],
F [auth D]		PF10613Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd)Ligated ion channel L-glutamate- and glycine-binding siteThis region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ...This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF00060.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth H],
B [auth F],
G [auth E],
H [auth G]		Voltage-dependent calcium channel gamma-2 subunit
C,
D [auth B],
E [auth A],
F [auth D]		Isoform Flip of Glutamate receptor 2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth H],
B [auth F],
G [auth E],
H [auth G]		IPR051072Voltage-dependent calcium channel gamma subunitFamily
A [auth H],
B [auth F],
G [auth E],
H [auth G]		IPR004031PMP-22/EMP/MP20/ClaudinFamily
A [auth H],
B [auth F],
G [auth E],
H [auth G]		IPR005422Voltage-dependent calcium channel, gamma-2 subunitFamily
A [auth H],
B [auth F],
G [auth E],
H [auth G]		IPR008368Voltage-dependent calcium channel, gamma subunitFamily
C,
D [auth B],
E [auth A],
F [auth D]		IPR028082Periplasmic binding protein-like IHomologous Superfamily
C,
D [auth B],
E [auth A],
F [auth D]		IPR001508Ionotropic glutamate receptor, metazoaFamily
C,
D [auth B],
E [auth A],
F [auth D]		IPR001828Receptor, ligand binding regionDomain
C,
D [auth B],
E [auth A],
F [auth D]		IPR001320Ionotropic glutamate receptor, C-terminalDomain
C,
D [auth B],
E [auth A],
F [auth D]		IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
C,
D [auth B],
E [auth A],
F [auth D]		IPR015683Ionotropic glutamate receptorFamily

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
PDBTMAnnotated as membrane protein by PDBTM