9B2T | pdb_00009b2t

Haspin bound to nucleosome in position 2


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth B]SCOP2B SuperfamilyCore histone-like 8042439 3001387 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyCore histone-like 8042439 3001387 SCOP2B (2022-06-29)
F [auth D]SCOP2B SuperfamilyCore histone-like 8041279 3001387 SCOP2B (2022-06-29)
J [auth H]SCOP2B SuperfamilyCore histone-like 8041279 3001387 SCOP2B (2022-06-29)
E [auth C]SCOP2B SuperfamilyCore histone-like 8041278 3001387 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyCore histone-like 8041278 3001387 SCOP2B (2022-06-29)
C [auth A]SCOP2B SuperfamilyCore histone-like 8041272 3001387 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyCore histone-like 8041272 3001387 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth B]WD40e9b2tB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
H [auth F]WD40e9b2tF1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
F [auth D]WD40e9b2tD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
J [auth H]WD40e9b2tH1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
KWD40e9b2tK1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
E [auth C]WD40e9b2tC1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
I [auth G]WD40e9b2tG1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
C [auth A]WD40e9b2tA1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
G [auth E]WD40e9b2tE1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth B],
H [auth F]
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
E [auth C],
I [auth G]
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
C [auth A],
G [auth E]
PF00125Core histone H2A/H2B/H3/H4 domain (Histone)Core histone H2A/H2B/H3/H4 domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth I]601 DNA (185-MER)---
D [auth B],
H [auth F]
Histone H4
F [auth D],
J [auth H]
Histone H2B 1.1 -
Serine/threonine-protein kinase haspin
E [auth C],
I [auth G]
Histone H2A
C [auth A],
G [auth E]
Histone H3.2 -
B [auth J]601 DNA (185-MER)---

Pharos: Disease Associations Pharos Homepage Annotation