9AXU | pdb_00009axu

Non-translating S. pombe ribosome large subunit


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth Q]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
I [auth Q]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins. Domain
I [auth Q]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
H [auth P]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins. Domain
H [auth P]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
H [auth P]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
G [auth O]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
F [auth N]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
F [auth N]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
F [auth N]PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
B [auth 1]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
R [auth Z]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
Q [auth Y]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
Q [auth Y]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
Q [auth Y]PF00467KOW motif (KOW)KOW motif- Family
P [auth X]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
P [auth X]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
O [auth W]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
O [auth W]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
N [auth V]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
M [auth U]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
M [auth U]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
L [auth T]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
L [auth T]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
K [auth S]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
J [auth R]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
J [auth R]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35AeThis entry represents the ribosomal eL33 previously known as L35A, eukaryotic and archaebacterial ribosomal proteins. Domain
A [auth 0]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth Q]Large ribosomal subunit protein uL18B
H [auth P]Large ribosomal subunit protein uL4A
G [auth O]Large ribosomal subunit protein uL3A
F [auth N]Large ribosomal subunit protein uL2C
E [auth 4]5.8S ribosomal RNA---
QA [auth y]Large ribosomal subunit protein eL28
PA [auth x]Large ribosomal subunit protein eL39
OA [auth w]Large ribosomal subunit protein eL38A
NA [auth v]Large ribosomal subunit protein eL37B
D [auth 3]5S ribosomal RNA---
MA [auth u]Large ribosomal subunit protein eL36B
LA [auth t]Large ribosomal subunit protein uL29
KA [auth s]Large ribosomal subunit protein eL34B
JA [auth r]Large ribosomal subunit protein eL33A
IA [auth q]Large ribosomal subunit protein eL32A
HA [auth p]Large ribosomal subunit protein eL31
GA [auth o]Large ribosomal subunit protein eL30A
FA [auth n]Large ribosomal subunit protein eL29
EA [auth m]Large ribosomal subunit protein uL15B
DA [auth l]Large ribosomal subunit protein eL27A
C [auth 2]28S ribosomal RNA---
CA [auth k]Large ribosomal subunit protein uL24
BA [auth j]Large ribosomal subunit protein uL23A
AA [auth i]Large ribosomal subunit protein eL24B
Z [auth h]Large ribosomal subunit protein uL14B
Y [auth g]Large ribosomal subunit protein eL22
X [auth f]Large ribosomal subunit protein eL21B
W [auth e]Large ribosomal subunit protein eL20A
V [auth d]Large ribosomal subunit protein eL19B
U [auth c]Large ribosomal subunit protein eL18B
T [auth b]Large ribosomal subunit protein uL22A
B [auth 1]Large ribosomal subunit protein eL43A
S [auth a]Large ribosomal subunit protein uL13A
R [auth Z]Large ribosomal subunit protein eL15B
Q [auth Y]Large ribosomal subunit protein eL14
P [auth X]Large ribosomal subunit protein eL13
O [auth W]Large ribosomal subunit protein uL5A
N [auth V]Large ribosomal subunit protein uL16A
M [auth U]Large ribosomal subunit protein uL6B
L [auth T]Large ribosomal subunit protein eL8
K [auth S]Large ribosomal subunit protein uL30C
J [auth R]Large ribosomal subunit protein eL6
A [auth 0]Large ribosomal subunit protein eL42

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth Q]IPR005485Large ribosomal subunit protein uL18, eukaryota/archaeaFamily
I [auth Q]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
H [auth P]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
H [auth P]IPR002136Large ribosomal subunit protein uL4Family
H [auth P]IPR013000Large ribosomal subunit protein uL4, eukaryota/archaea, conserved siteConserved Site
H [auth P]IPR045240Large ribosomal subunit protein uL4, eukaryota/archaeaFamily
H [auth P]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
G [auth O]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
G [auth O]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
G [auth O]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
G [auth O]IPR000597Large ribosomal subunit protein uL3Family
G [auth O]IPR045077Large ribosomal subunit protein uL3, archaea/eukaryotaFamily
F [auth N]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
F [auth N]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
F [auth N]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
F [auth N]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
F [auth N]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
F [auth N]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
F [auth N]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
F [auth N]IPR002171Large ribosomal subunit protein uL2Family
QA [auth y]IPR029004Ribosomal eL28/Mak16Domain
QA [auth y]IPR002672Large ribosomal subunit protein eL28Family
PA [auth x]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
PA [auth x]IPR000077Large ribosomal subunit protein eL39Family
PA [auth x]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
OA [auth w]IPR002675Large ribosomal subunit protein eL38Family
OA [auth w]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
NA [auth v]IPR001569Large ribosomal subunit protein eL37Family
NA [auth v]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
NA [auth v]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
NA [auth v]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
MA [auth u]IPR000509Large ribosomal subunit protein eL36Family
MA [auth u]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
LA [auth t]IPR001854Large ribosomal subunit protein uL29Family
LA [auth t]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
LA [auth t]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
LA [auth t]IPR045059Large ribosomal subunit protein uL29, eukaryotaFamily
KA [auth s]IPR008195Large ribosomal subunit protein eL34Family
KA [auth s]IPR038562Large ribosomal subunit protein eL34, C-terminal domain superfamilyHomologous Superfamily
KA [auth s]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
JA [auth r]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
JA [auth r]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
JA [auth r]IPR001780Large ribosomal subunit protein eL33Family
JA [auth r]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
IA [auth q]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
IA [auth q]IPR001515Large ribosomal subunit protein eL32Family
IA [auth q]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
HA [auth p]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
HA [auth p]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
HA [auth p]IPR000054Large ribosomal subunit protein eL31Family
GA [auth o]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
GA [auth o]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
GA [auth o]IPR039109Large ribosomal subunit protein eL30-likeFamily
GA [auth o]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
FA [auth n]IPR002673Large ribosomal subunit protein eL29Family
EA [auth m]IPR021131Large ribosomal subunit protein uL15/eL18Domain
EA [auth m]IPR030878Large ribosomal subunit protein uL15Family
EA [auth m]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
EA [auth m]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
DA [auth l]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
DA [auth l]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
DA [auth l]IPR005824KOWDomain
DA [auth l]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
DA [auth l]IPR001141Large ribosomal subunit protein eL27Family
DA [auth l]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
CA [auth k]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
CA [auth k]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
CA [auth k]IPR005756Large ribosomal subunit protein uL24, eukaryota_archaeaFamily
CA [auth k]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
CA [auth k]IPR005824KOWDomain
CA [auth k]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
BA [auth j]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
BA [auth j]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
BA [auth j]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
BA [auth j]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
BA [auth j]IPR013025Large ribosomal subunit protein uL23-likeFamily
AA [auth i]IPR056366Large ribosomal subunit protein eL24Family
AA [auth i]IPR000988Large ribosomal subunit protein eL24-related, N-terminalDomain
AA [auth i]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
AA [auth i]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
Z [auth h]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
Z [auth h]IPR000218Large ribosomal subunit protein uL14Family
Z [auth h]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
Y [auth g]IPR002671Large ribosomal subunit protein eL22Family
Y [auth g]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
X [auth f]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
X [auth f]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
X [auth f]IPR001147Large ribosomal subunit protein eL21Family
X [auth f]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
W [auth e]IPR028877Large ribosomal subunit protein eL20Family
W [auth e]IPR023573Large ribosomal subunit protein eL20 domainDomain
W [auth e]IPR021138Large ribosomal subunit protein eL20, eukaryotaFamily
V [auth d]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
V [auth d]IPR039547Large ribosomal subunit protein eL19Family
V [auth d]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
V [auth d]IPR000196Large ribosomal subunit protein eL19 domainDomain
V [auth d]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
U [auth c]IPR021131Large ribosomal subunit protein uL15/eL18Domain
U [auth c]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
U [auth c]IPR000039Large ribosomal subunit protein eL18Family
U [auth c]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
T [auth b]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
T [auth b]IPR005721Large ribosomal subunit protein uL22, eukaryota/archaeaFamily
T [auth b]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
T [auth b]IPR001063Large ribosomal subunit protein uL22Family
B [auth 1]IPR002674Large ribosomal subunit protein eL43Family
B [auth 1]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
B [auth 1]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
B [auth 1]IPR050522Eukaryotic ribosomal protein eL43Family
S [auth a]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
S [auth a]IPR005822Large ribosomal subunit protein uL13Family
S [auth a]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
S [auth a]IPR005755Large ribosomal subunit protein uL13, eukaryota/archaeaFamily
R [auth Z]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
R [auth Z]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
R [auth Z]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
R [auth Z]IPR000439Large ribosomal subunit protein eL15Family
Q [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
Q [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Q [auth Y]IPR039660Large ribosomal subunit protein eL14Family
Q [auth Y]IPR002784Large ribosomal subunit protein eL14 domainDomain
Q [auth Y]IPR005824KOWDomain
P [auth X]IPR001380Large ribosomal subunit protein eL13Family
P [auth X]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
O [auth W]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
O [auth W]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
O [auth W]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
O [auth W]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
O [auth W]IPR002132Large ribosomal subunit protein uL5Family
N [auth V]IPR001197Large ribosomal subunit protein uL16, eukaryota/archaeaFamily
N [auth V]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
N [auth V]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryota/archaeaConserved Site
N [auth V]IPR016180Large ribosomal subunit protein uL16 domainDomain
N [auth V]IPR047873Large ribosomal subunit protein uL16Family
M [auth U]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
M [auth U]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
M [auth U]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
M [auth U]IPR000702Large ribosomal subunit protein uL6-likeFamily
L [auth T]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
L [auth T]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
L [auth T]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
L [auth T]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
L [auth T]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
L [auth T]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
K [auth S]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
K [auth S]IPR035808Large ribosomal subunit protein uL30, eukaryota/archaeaDomain
K [auth S]IPR005998Large ribosomal subunit protein uL30, eukaryotaFamily
K [auth S]IPR039699Large ribosomal subunit protein uL30Family
K [auth S]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotaDomain
K [auth S]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
K [auth S]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
J [auth R]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
J [auth R]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
J [auth R]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
J [auth R]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
J [auth R]IPR000915Large ribosomal subunit protein eL6Family
A [auth 0]IPR053708Eukaryotic Ribosomal Large Subunit eL42Homologous Superfamily
A [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
A [auth 0]IPR000552Large ribosomal subunit protein eL42Family