9AU4 | pdb_00009au4

Cryo-EM structure of a photosystem I variant containing an unusual plastoquinone derivative in its electron transfer chain


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
S [auth j]SCOP2B SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8074512 3000824 SCOP2B (2022-06-29)
H [auth S]SCOP2B SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8074512 3000824 SCOP2B (2022-06-29)
DA [auth J]SCOP2B SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8074512 3000824 SCOP2B (2022-06-29)
R [auth i]SCOP2B SuperfamilySubunit VIII of photosystem I reaction centre, PsaI 8074504 3000819 SCOP2B (2022-06-29)
G [auth R]SCOP2B SuperfamilySubunit VIII of photosystem I reaction centre, PsaI 8074504 3000819 SCOP2B (2022-06-29)
CA [auth I]SCOP2B SuperfamilySubunit VIII of photosystem I reaction centre, PsaI 8074504 3000819 SCOP2B (2022-06-29)
Q [auth f]SCOP2B SuperfamilySubunit III of photosystem I reaction centre, PsaF 8074438 3000813 SCOP2B (2022-06-29)
F [auth Q]SCOP2B SuperfamilySubunit III of photosystem I reaction centre, PsaF 8074438 3000813 SCOP2B (2022-06-29)
BA [auth F]SCOP2B SuperfamilySubunit III of photosystem I reaction centre, PsaF 8074438 3000813 SCOP2B (2022-06-29)
P [auth e]SCOP2B SuperfamilyElectron transport accessory proteins 8044474 3000325 SCOP2B (2022-06-29)
E [auth P]SCOP2B SuperfamilyElectron transport accessory proteins 8044474 3000325 SCOP2B (2022-06-29)
AA [auth E]SCOP2B SuperfamilyElectron transport accessory proteins 8044474 3000325 SCOP2B (2022-06-29)
Z [auth D]SCOP2B SuperfamilyPhotosystem I subunit PsaD 8074480 3000951 SCOP2B (2022-06-29)
O [auth d]SCOP2B SuperfamilyPhotosystem I subunit PsaD 8074480 3000951 SCOP2B (2022-06-29)
D [auth O]SCOP2B SuperfamilyPhotosystem I subunit PsaD 8074480 3000951 SCOP2B (2022-06-29)
X [auth B]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8074462 3000850 SCOP2B (2022-06-29)
M [auth b]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8074462 3000850 SCOP2B (2022-06-29)
B [auth H]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8074462 3000850 SCOP2B (2022-06-29)
V [auth m]SCOP2B SuperfamilySubunit XII of photosystem I reaction centre, PsaM 8074450 3000829 SCOP2B (2022-06-29)
K [auth V]SCOP2B SuperfamilySubunit XII of photosystem I reaction centre, PsaM 8074450 3000829 SCOP2B (2022-06-29)
GA [auth M]SCOP2B SuperfamilySubunit XII of photosystem I reaction centre, PsaM 8074450 3000829 SCOP2B (2022-06-29)
U [auth l]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8087170 3000870 SCOP2B (2022-06-29)
J [auth U]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8087170 3000870 SCOP2B (2022-06-29)
FA [auth L]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8087170 3000870 SCOP2B (2022-06-29)
W [auth A]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8074454 3000850 SCOP2B (2022-06-29)
L [auth a]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8074454 3000850 SCOP2B (2022-06-29)
A [auth G]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8074454 3000850 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
T [auth k]e9au4k1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
I [auth T]e9au4T1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
EA [auth K]e9au4K1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
S [auth j]e9au4j1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
H [auth S]e9au4S1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
DA [auth J]e9au4J1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
R [auth i]e9au4i1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
G [auth R]e9au4R1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
CA [auth I]e9au4I1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
Q [auth f]e9au4f1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
F [auth Q]e9au4Q1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
BA [auth F]e9au4F1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
P [auth e]e9au4e1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
E [auth P]e9au4P1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
AA [auth E]e9au4E1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
Z [auth D]e9au4D1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
O [auth d]e9au4d1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
D [auth O]e9au4O1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
Y [auth C]e9au4C1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
N [auth c]e9au4c1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
C [auth N]e9au4N1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
X [auth B]e9au4B1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
M [auth b]e9au4b1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
B [auth H]GFO_IDH_MocAe9au4H01 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: GFO_IDH_MocAECOD (v295)
V [auth m]e9au4m1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
K [auth V]e9au4V1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
GA [auth M]e9au4M1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
U [auth l]e9au4l1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
J [auth U]e9au4U1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
FA [auth L]e9au4L1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
W [auth A]e9au4A1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
L [auth a]e9au4a1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)
A [auth G]e9au4G1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF:ECOD (v295)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
EA [auth K],
I [auth T],
T [auth k]
PF01241Photosystem I psaG / psaK (PSI_PSAK)Photosystem I psaG / psaK- Family
CA [auth I],
G [auth R],
R [auth i]
PF00796Photosystem I reaction centre subunit VIII (PSI_8)Photosystem I reaction centre subunit VIII- Family
BA [auth F],
F [auth Q],
Q [auth f]
PF02507Photosystem I reaction centre subunit III (PSI_PsaF)Photosystem I reaction centre subunit III- Family
AA [auth E],
E [auth P],
P [auth e]
PF02427Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE)Photosystem I reaction centre subunit IV / PsaEPsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. Domain
D [auth O],
O [auth d],
Z [auth D]
PF02531PsaD (PsaD)PsaD- Family
C [auth N],
N [auth c],
Y [auth C]
PF128384Fe-4S dicluster domain (Fer4_7)4Fe-4S dicluster domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Domain
B [auth H],
M [auth b],
X [auth B]
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
GA [auth M],
K [auth V],
V [auth m]
PF07465Photosystem I protein M (PsaM) (PsaM)Photosystem I protein M (PsaM)- Family
FA [auth L],
J [auth U],
U [auth l]
PF02605Photosystem I reaction centre subunit XI (PsaL)Photosystem I reaction centre subunit XI- Family
A [auth G],
L [auth a],
W [auth A]
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
EA [auth K],
I [auth T],
T [auth k]
Photosystem I reaction center subunit PsaK 2-
DA [auth J],
H [auth S],
S [auth j]
Photosystem I reaction center subunit IX-
CA [auth I],
G [auth R],
R [auth i]
Photosystem I reaction center subunit VIII-
BA [auth F],
F [auth Q],
Q [auth f]
Photosystem I reaction center subunit III-
AA [auth E],
E [auth P],
P [auth e]
Photosystem I reaction center subunit IV-
D [auth O],
O [auth d],
Z [auth D]
Photosystem I reaction center subunit II-
C [auth N],
N [auth c],
Y [auth C]
Photosystem I iron-sulfur center
B [auth H],
M [auth b],
X [auth B]
Photosystem I P700 chlorophyll a apoprotein A2
GA [auth M],
K [auth V],
V [auth m]
Photosystem I reaction center subunit XII-
FA [auth L],
J [auth U],
U [auth l]
Photosystem I reaction center subunit XI-
A [auth G],
L [auth a],
W [auth A]
Photosystem I P700 chlorophyll a apoprotein A1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
EA [auth K],
I [auth T],
T [auth k]
IPR037101Photosystem I reaction centre subunit PsaKHomologous Superfamily
EA [auth K],
I [auth T],
T [auth k]
IPR000549Photosystem I reaction center subunit V/PsaKFamily
EA [auth K],
I [auth T],
T [auth k]
IPR035982Photosystem I reaction centre subunit PsaK superfamilyHomologous Superfamily
EA [auth K],
I [auth T],
T [auth k]
IPR017492Photosystem I reaction center subunit PsaKFamily
DA [auth J],
H [auth S],
S [auth j]
IPR002615Photosystem I PsaJ, reaction centre subunit IXFamily
DA [auth J],
H [auth S],
S [auth j]
IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilyHomologous Superfamily
CA [auth I],
G [auth R],
R [auth i]
IPR036357Photosystem I reaction centre subunit VIII superfamilyHomologous Superfamily
CA [auth I],
G [auth R],
R [auth i]
IPR001302Photosystem I reaction centre subunit VIIIFamily
BA [auth F],
F [auth Q],
Q [auth f]
IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
BA [auth F],
F [auth Q],
Q [auth f]
IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily
AA [auth E],
E [auth P],
P [auth e]
IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
AA [auth E],
E [auth P],
P [auth e]
IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
D [auth O],
O [auth d],
Z [auth D]
IPR003685Photosystem I PsaDFamily
D [auth O],
O [auth d],
Z [auth D]
IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily
C [auth N],
N [auth c],
Y [auth C]
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
C [auth N],
N [auth c],
Y [auth C]
IPR050157Photosystem I iron-sulfur centerFamily
C [auth N],
N [auth c],
Y [auth C]
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
C [auth N],
N [auth c],
Y [auth C]
IPR017491Photosystem I protein PsaCFamily
B [auth H],
M [auth b],
X [auth B]
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
B [auth H],
M [auth b],
X [auth B]
IPR001280Photosystem I PsaA/PsaBFamily
B [auth H],
M [auth b],
X [auth B]
IPR006244Photosystem I PsaBFamily
B [auth H],
M [auth b],
X [auth B]
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
GA [auth M],
K [auth V],
V [auth m]
IPR010010Photosystem I PsaM, reaction centreFamily
GA [auth M],
K [auth V],
V [auth m]
IPR037279Photosystem I PsaM, reaction centre superfamilyHomologous Superfamily
FA [auth L],
J [auth U],
U [auth l]
IPR003757Photosystem I PsaL, reaction centre subunit XIDomain
FA [auth L],
J [auth U],
U [auth l]
IPR022980Photosystem I, reaction centre subunit XIFamily
FA [auth L],
J [auth U],
U [auth l]
IPR036592Photosystem I PsaL, reaction centre subunit XI superfamilyHomologous Superfamily
A [auth G],
L [auth a],
W [auth A]
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
A [auth G],
L [auth a],
W [auth A]
IPR001280Photosystem I PsaA/PsaBFamily
A [auth G],
L [auth a],
W [auth A]
IPR006243Photosystem I PsaAFamily
A [auth G],
L [auth a],
W [auth A]
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site