9A78 | pdb_00009a78

Integrative model of SYFB-CGOX by crosslinking MS and deep learning

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	CGOX_BACSU	protoporphyrinogen oxidase activity, oxygen as acceptor oxidoreductase activity oxidoreductase activity, acting on the CH-CH group of donors catalytic activity oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor protoporphyrinogen oxidase activity	porphyrin-containing compound biosynthetic process tetrapyrrole biosynthetic process tetrapyrrole metabolic process biosynthetic process metabolic process cellular process porphyrin-containing compound metabolic process	cell periphery cellular anatomical structure plasma membrane membrane intracellular anatomical structure cytoplasm
A	SYFB_BACSU	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding adenyl nucleotide binding cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding ligase activity, forming carbon-oxygen bonds aminoacyl-tRNA ligase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid phenylalanine-tRNA ligase activity catalytic activity, acting on a tRNA catalytic activity ligase activity catalytic activity, acting on a protein RNA binding tRNA binding nucleic acid binding transferase activity	amino acid activation tRNA aminoacylation RNA metabolic process primary metabolic process amino acid metabolic process translation gene expression tRNA aminoacylation for protein translation protein biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process tRNA metabolic process nucleobase-containing compound metabolic process biosynthetic process amino acid activation tRNA aminoacylation RNA metabolic process primary metabolic process amino acid metabolic process translation gene expression tRNA aminoacylation for protein translation protein biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process tRNA metabolic process nucleobase-containing compound metabolic process biosynthetic process metabolic process cellular process macromolecule metabolic process protein metabolic process phenylalanyl-tRNA aminoacylation	protein-containing complex cellular anatomical structure intracellular anatomical structure catalytic complex cytoplasm phenylalanine-tRNA ligase complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR002937	Amine oxidase	Domain
B	IPR050464	Zeta Carotene Desaturase and Related Oxidoreductases	Family
B	IPR036188	FAD/NAD(P)-binding domain superfamily	Homologous Superfamily
B	IPR004572	Protoporphyrinogen oxidase	Family
A	IPR009061	Putative DNA-binding domain superfamily	Homologous Superfamily
A	IPR045060	Phenylalanine-tRNA ligase, class IIc, beta subunit	Family
A	IPR020825	Phenylalanyl-tRNA synthetase-like, B3/B4	Homologous Superfamily
A	IPR045864	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Homologous Superfamily
A	IPR002547	tRNA-binding domain	Domain
A	IPR005147	tRNA synthetase, B5-domain	Domain
A	IPR005146	B3/B4 tRNA-binding domain	Domain
A	IPR041616	Phenylalanyl tRNA synthetase beta chain, core domain	Domain
A	IPR033714	Phenylalanly tRNA synthetase, tRNA-binding-domain	Domain
A	IPR005121	Ferrodoxin-fold anticodon-binding domain	Domain
A	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
A	IPR036690	Ferrodoxin-fold anticodon-binding domain superfamily	Homologous Superfamily
A	IPR004532	Phenylalanine-tRNA ligase, class IIc, beta subunit, bacterial type	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.