8ZOM | pdb_00008zom

Cryo-EM structure of pyraclostrobin-bound Arachis hypogaea bc1 complex

External Resource: Annotation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
K [auth M]		PF05193Peptidase M16 inactive domain (Peptidase_M16_C)Peptidase M16 inactive domainPeptidase M16 consists of two structurally related domains. One is the active peptidase, whereas the other is inactive. The two domains hold the substrate like a clamp [1]. Domain
A,
K [auth M]		PF00675Insulinase (Peptidase family M16) (Peptidase_M16)Insulinase (Peptidase family M16)- Family
B,
L [auth N]		PF05193Peptidase M16 inactive domain (Peptidase_M16_C)Peptidase M16 inactive domainPeptidase M16 consists of two structurally related domains. One is the active peptidase, whereas the other is inactive. The two domains hold the substrate like a clamp [1]. Domain
B,
L [auth N]		PF00675Insulinase (Peptidase family M16) (Peptidase_M16)Insulinase (Peptidase family M16)- Family
C,
M [auth O]		PF00032Cytochrome b(C-terminal)/b6/petD (Cytochrom_B_C)Cytochrome b(C-terminal)/b6/petDDomain
C,
M [auth O]		PF00033Cytochrome b/b6/petB (Cytochrome_B)Cytochrome b/b6/petBDomain
D,
N [auth P]		PF02167Cytochrome C1 family (Cytochrom_C1)Cytochrome C1 family- Family
E,
O [auth Q]		PF02921Ubiquinol cytochrome reductase transmembrane region (UCR_TM)Ubiquinol cytochrome reductase transmembrane region- Family
E,
O [auth Q]		PF00355Rieske [2Fe-2S] domain (Rieske)Rieske [2Fe-2S] domainThe rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ...The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in this motif form a disulphide bridge, which stabilises the protein [4].
Domain
F,
P [auth R]		PF02271Ubiquinol-cytochrome C reductase complex 14kD subunit (UCR_14kD)Ubiquinol-cytochrome C reductase complex 14kD subunit- Family
G,
Q [auth S]		PF10890Cytochrome b-c1 complex subunit 8 (Cyt_b-c1_8)Cytochrome b-c1 complex subunit 8- Family
H,
R [auth T]		PF02320Ubiquinol-cytochrome C reductase hinge protein (UCR_hinge)Ubiquinol-cytochrome C reductase hinge proteinThe ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex [1]. This Pfam family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c ...The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex [1]. This Pfam family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c complex.
Domain
I [auth J],
S [auth V]		PF05365Cytochrome b-c1 complex subunit 9 (UCR_UQCRX_QCR9)Cytochrome b-c1 complex subunit 9- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
K [auth M]		Mitochondrial-processing peptidase subunit alpha
B,
L [auth N]		Mitochondrial-processing peptidase subunit beta
C,
M [auth O]		Cytochrome b
D,
N [auth P]		Cytochrome c domain-containing protein
E,
O [auth Q]		Cytochrome b-c1 complex subunit Rieske, mitochondrial -
F,
P [auth R]		Cytochrome b-c1 complex subunit 7-
G,
Q [auth S]		Cytochrome b-c1 complex subunit 8-
H,
R [auth T]		Cytochrome b-c1 complex subunit 6-
I [auth J],
S [auth V]		Complex III subunit 9-
J [auth K],
T [auth W]		Ubiquinol-cytochrome c reductase complex 6.7 kDa protein- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
K [auth M]		IPR007863Peptidase M16, C-terminalDomain
A,
K [auth M]		IPR011765Peptidase M16, N-terminalDomain
A,
K [auth M]		IPR011249Metalloenzyme, LuxS/M16 peptidase-likeHomologous Superfamily
A,
K [auth M]		IPR050361Mitochondrial Processing Peptidase/Ubiquinol-cytochrome c Reductase ComplexFamily
A,
K [auth M]		IPR001431Peptidase M16, zinc-binding siteBinding Site
B,
L [auth N]		IPR007863Peptidase M16, C-terminalDomain
B,
L [auth N]		IPR011765Peptidase M16, N-terminalDomain
B,
L [auth N]		IPR011249Metalloenzyme, LuxS/M16 peptidase-likeHomologous Superfamily
B,
L [auth N]		IPR050361Mitochondrial Processing Peptidase/Ubiquinol-cytochrome c Reductase ComplexFamily
B,
L [auth N]		IPR001431Peptidase M16, zinc-binding siteBinding Site
C,
M [auth O]		IPR036150Cytochrome b/b6, C-terminal domain superfamilyHomologous Superfamily
C,
M [auth O]		IPR027387Cytochrome b/b6-like domain superfamilyHomologous Superfamily
C,
M [auth O]		IPR048260Cytochrome b/b6, C-terminal domain, eukaryotic/bacterialDomain
C,
M [auth O]		IPR016174Di-haem cytochrome, transmembraneHomologous Superfamily
C,
M [auth O]		IPR005798Cytochrome b/b6, C-terminalDomain
C,
M [auth O]		IPR048259Cytochrome b/b6, N-terminal domain, eukaryotic/bacterialDomain
C,
M [auth O]		IPR030689Cytochrome bFamily
C,
M [auth O]		IPR005797Cytochrome b/b6, N-terminal domainDomain
D,
N [auth P]		IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
D,
N [auth P]		IPR002326Cytochrome c1Family
D,
N [auth P]		IPR009056Cytochrome c-like domainDomain
D,
N [auth P]		IPR021157Cytochrome c1, transmembrane anchor, C-terminalHomologous Superfamily
E,
O [auth Q]		IPR017941Rieske [2Fe-2S] iron-sulphur domainDomain
E,
O [auth Q]		IPR005805Rieske iron-sulphur protein, C-terminalDomain
E,
O [auth Q]		IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilyHomologous Superfamily
E,
O [auth Q]		IPR014349Rieske iron-sulphur proteinFamily
E,
O [auth Q]		IPR006317Ubiquinol-cytochrome c reductase, iron-sulphur subunitDomain
E,
O [auth Q]		IPR004192Cytochrome b-c1 complex subunit Rieske, transmembrane domainDomain
F,
P [auth R]		IPR003197Cytochrome b-c1 complex subunit 7Family
F,
P [auth R]		IPR036544Cytochrome b-c1 complex subunit 7 superfamilyHomologous Superfamily
G,
Q [auth S]		IPR036642Cytochrome b-c1 complex subunit 8 superfamilyHomologous Superfamily
G,
Q [auth S]		IPR020101Cytochrome b-c1 complex subunit 8, plantsFamily
G,
Q [auth S]		IPR004252Probable transposase, Ptta/En/Spm, plantFamily
H,
R [auth T]		IPR003422Cytochrome b-c1 complex, subunit 6Family
H,
R [auth T]		IPR023184Ubiquinol-cytochrome C reductase hinge domainDomain
H,
R [auth T]		IPR036811Ubiquinol-cytochrome C reductase hinge domain superfamilyHomologous Superfamily
I [auth J],
S [auth V]		IPR008027Cytochrome b-c1 complex subunit 9Family
I [auth J],
S [auth V]		IPR036656Cytochrome b-c1 complex subunit 9 superfamilyHomologous Superfamily