8ZDQ | pdb_00008zdq

Cryo-EM structure of Mycobacteriophage Douge complete baseplate (gp13, gp17, gp23, gp16, gp18 and gp20)

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
G [auth S], H [auth T], I [auth U]	PF14594	Siphovirus ReqiPepy6 Gp37-like protein (Sipho_Gp37)	Siphovirus ReqiPepy6 Gp37-like protein	-	Family
A [auth M], B [auth N], C [auth O], D [auth P], E [auth Q], A [auth M], B [auth N], C [auth O], D [auth P], E [auth Q], F [auth R]	PF02368	Bacterial Ig-like domain (group 2) (Big_2)	Bacterial Ig-like domain (group 2)	This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
EA [auth v], FA [auth w], GA [auth x]	Central Fiber Protein (gp20)	-	-	-
BA [auth s], CA [auth t], DA [auth u]	Baseplate Hub Protein (gp18)	-	-	-
AA [auth r], V [auth m], W [auth n], X [auth o], Y [auth p], AA [auth r], V [auth m], W [auth n], X [auth o], Y [auth p], Z [auth q]	Distal Tail Protein (gp17)	-	-	-
J [auth a], K [auth b], L [auth c], M [auth d], N [auth e], J [auth a], K [auth b], L [auth c], M [auth d], N [auth e], O [auth f], P [auth g], Q [auth h], R [auth i], S [auth j], T [auth k], U [auth l]	Baseplate Upper Protein (gp23)	-	-	-
G [auth S], H [auth T], I [auth U]	Tape Measure Protein (gp16)	cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity	biological process involved in interspecies interaction between organisms symbiont-mediated cytolysis of host cell disruption of cell in another organism cytolysis biological process involved in interaction with host biological process involved in symbiotic interaction cytolysis in another organism cellular process disruption of anatomical structure in another organism symbiont-mediated killing of host cell killing of cells of another organism cell killing proteolysis metabolic process biological process involved in interspecies interaction between organisms symbiont-mediated cytolysis of host cell disruption of cell in another organism cytolysis biological process involved in interaction with host biological process involved in symbiotic interaction cytolysis in another organism cellular process disruption of anatomical structure in another organism symbiont-mediated killing of host cell killing of cells of another organism cell killing proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process	-
A [auth M], B [auth N], C [auth O], D [auth P], E [auth Q], A [auth M], B [auth N], C [auth O], D [auth P], E [auth Q], F [auth R]	Tail Tube Protein (gp13)	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
BA [auth s], CA [auth t], DA [auth u]	IPR029432	Gp28/Gp37-like domain	Domain
J [auth a], K [auth b], L [auth c], M [auth d], N [auth e], J [auth a], K [auth b], L [auth c], M [auth d], N [auth e], O [auth f], P [auth g], Q [auth h], R [auth i], S [auth j], T [auth k], U [auth l]	IPR055688	LtfC/p132/Gp6, beta-sandwich domain	Domain
G [auth S], H [auth T], I [auth U]	IPR000064	Endopeptidase, NLPC/P60 domain	Domain
G [auth S], H [auth T], I [auth U]	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
A [auth M], B [auth N], C [auth O], D [auth P], E [auth Q], A [auth M], B [auth N], C [auth O], D [auth P], E [auth Q], F [auth R]	IPR003343	Bacterial Ig-like domain, group 2	Domain
A [auth M], B [auth N], C [auth O], D [auth P], E [auth Q], A [auth M], B [auth N], C [auth O], D [auth P], E [auth Q], F [auth R]	IPR008964	Invasin/intimin cell-adhesion fragments	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.