8Z5W | pdb_00008z5w

Cryo-EM structure of the LRR protein within the polar flagellar motor

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
MA [auth q]	PKD_channel	e8z5wq1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
LA [auth p]	PKD_channel	e8z5wp1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
KA [auth o]	PKD_channel	e8z5wo1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
JA [auth n]	PKD_channel	e8z5wn1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
IA [auth m]	PKD_channel	e8z5wm1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
HA [auth l]	PKD_channel	e8z5wl1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
GA [auth k]	PKD_channel	e8z5wk1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
FA [auth j]	PKD_channel	e8z5wj1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
EA [auth i]	PKD_channel	e8z5wi1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
DA [auth h]	PKD_channel	e8z5wh1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
CA [auth g]	PKD_channel	e8z5wg1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
Z [auth d]	PKD_channel	e8z5wd1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
Y [auth c]	PKD_channel	e8z5wc1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
X [auth b]	PKD_channel	e8z5wb1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
BA [auth f]	PKD_channel	e8z5wf1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
AA [auth e]	PKD_channel	e8z5we1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
W [auth AR]	PKD_channel	e8z5wAR1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
V [auth AQ]	PKD_channel	e8z5wAQ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
U [auth AP]	PKD_channel	e8z5wAP1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
T [auth C]	PKD_channel	e8z5wC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
S [auth B]	PKD_channel	e8z5wB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
C [auth A]	PKD_channel	e8z5wA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
IA [auth m], JA [auth n], KA [auth o], LA [auth p], MA [auth q]	Flagellar basal-body rod protein FlgF	-	bacterial-type flagellum-dependent swarming motility bacterial-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility	bacterial-type flagellum basal body cell projection cellular anatomical structure organelle membraneless organelle bacterial-type flagellum basal body, rod bacterial-type flagellum
CA [auth g], DA [auth h], EA [auth i], FA [auth j], GA [auth k], CA [auth g], DA [auth h], EA [auth i], FA [auth j], GA [auth k], HA [auth l]	Flagellar basal-body rod protein FlgC	-	bacterial-type flagellum-dependent swarming motility bacterial-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility	bacterial-type flagellum basal body cell projection cellular anatomical structure organelle membraneless organelle bacterial-type flagellum basal body, rod bacterial-type flagellum
AA [auth e], BA [auth f], X [auth b], Y [auth c], Z [auth d]	Flagellar basal body rod protein FlgB	-	bacterial-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility	bacterial-type flagellum basal body cell projection cellular anatomical structure organelle membraneless organelle bacterial-type flagellum basal body, rod bacterial-type flagellum
D [auth AA], E [auth AB], F [auth AC], G [auth AD], H [auth AE], D [auth AA], E [auth AB], F [auth AC], G [auth AD], H [auth AE], I [auth AF], J [auth AG], K [auth AH], L [auth AI], M [auth AJ], N [auth AK], O [auth AL], P [auth AM], Q [auth AN], R [auth AO]	Flagellar M-ring protein	cytoskeletal motor activity	bacterial-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility	cell periphery cellular anatomical structure plasma membrane membrane bacterial-type flagellum basal body cell projection bacterial-type flagellum basal body, MS ring organelle membraneless organelle bacterial-type flagellum
C [auth A], S [auth B], T [auth C], U [auth AP], V [auth AQ], C [auth A], S [auth B], T [auth C], U [auth AP], V [auth AQ], W [auth AR]	Flagellar basal-body rod protein FlgG	-	bacterial-type flagellum-dependent swarming motility bacterial-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility	bacterial-type flagellum basal body cell projection cellular anatomical structure organelle membraneless organelle bacterial-type flagellum basal body, rod bacterial-type flagellum basal body, distal rod bacterial-type flagellum
A [auth 0], B [auth 9]	Leucine-rich repeat protein	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
IA [auth m], JA [auth n], KA [auth o], LA [auth p], MA [auth q]	IPR020013	Flagellar hook-basal body protein, FlgE/F/G	Family
IA [auth m], JA [auth n], KA [auth o], LA [auth p], MA [auth q]	IPR012836	Flagellar basal-body rod FlgF	Family
IA [auth m], JA [auth n], KA [auth o], LA [auth p], MA [auth q]	IPR010930	Flagellar basal-body/hook protein, C-terminal domain	Domain
IA [auth m], JA [auth n], KA [auth o], LA [auth p], MA [auth q]	IPR053967	Flagellar hook protein FlgE/F/G-like, D1 domain	Domain
IA [auth m], JA [auth n], KA [auth o], LA [auth p], MA [auth q]	IPR001444	Flagellar basal body rod protein, N-terminal	Domain
IA [auth m], JA [auth n], KA [auth o], LA [auth p], MA [auth q]	IPR037925	Flagellar hook-basal body protein, FlgE/F/G-like	Homologous Superfamily
CA [auth g], DA [auth h], EA [auth i], FA [auth j], GA [auth k], CA [auth g], DA [auth h], EA [auth i], FA [auth j], GA [auth k], HA [auth l]	IPR019776	Flagellar basal body rod protein, conserved site	Conserved Site
CA [auth g], DA [auth h], EA [auth i], FA [auth j], GA [auth k], CA [auth g], DA [auth h], EA [auth i], FA [auth j], GA [auth k], HA [auth l]	IPR006299	Flagellar basal-body rod protein FlgC	Family
CA [auth g], DA [auth h], EA [auth i], FA [auth j], GA [auth k], CA [auth g], DA [auth h], EA [auth i], FA [auth j], GA [auth k], HA [auth l]	IPR010930	Flagellar basal-body/hook protein, C-terminal domain	Domain
CA [auth g], DA [auth h], EA [auth i], FA [auth j], GA [auth k], CA [auth g], DA [auth h], EA [auth i], FA [auth j], GA [auth k], HA [auth l]	IPR001444	Flagellar basal body rod protein, N-terminal	Domain
AA [auth e], BA [auth f], X [auth b], Y [auth c], Z [auth d]	IPR006300	Flagellar basal-body rod protein FlgB	Family
D [auth AA], E [auth AB], F [auth AC], G [auth AD], H [auth AE], D [auth AA], E [auth AB], F [auth AC], G [auth AD], H [auth AE], I [auth AF], J [auth AG], K [auth AH], L [auth AI], M [auth AJ], N [auth AK], O [auth AL], P [auth AM], Q [auth AN], R [auth AO]	IPR006182	Flagellar M-ring, N-terminal	Domain
D [auth AA], E [auth AB], F [auth AC], G [auth AD], H [auth AE], D [auth AA], E [auth AB], F [auth AC], G [auth AD], H [auth AE], I [auth AF], J [auth AG], K [auth AH], L [auth AI], M [auth AJ], N [auth AK], O [auth AL], P [auth AM], Q [auth AN], R [auth AO]	IPR045851	AMP-binding enzyme domain superfamily	Homologous Superfamily
D [auth AA], E [auth AB], F [auth AC], G [auth AD], H [auth AE], D [auth AA], E [auth AB], F [auth AC], G [auth AD], H [auth AE], I [auth AF], J [auth AG], K [auth AH], L [auth AI], M [auth AJ], N [auth AK], O [auth AL], P [auth AM], Q [auth AN], R [auth AO]	IPR013556	Flagellar M-ring C-terminal	Domain
D [auth AA], E [auth AB], F [auth AC], G [auth AD], H [auth AE], D [auth AA], E [auth AB], F [auth AC], G [auth AD], H [auth AE], I [auth AF], J [auth AG], K [auth AH], L [auth AI], M [auth AJ], N [auth AK], O [auth AL], P [auth AM], Q [auth AN], R [auth AO]	IPR043427	Lipoprotein YscJ/Flagellar M-ring protein	Family
D [auth AA], E [auth AB], F [auth AC], G [auth AD], H [auth AE], D [auth AA], E [auth AB], F [auth AC], G [auth AD], H [auth AE], I [auth AF], J [auth AG], K [auth AH], L [auth AI], M [auth AJ], N [auth AK], O [auth AL], P [auth AM], Q [auth AN], R [auth AO]	IPR000067	Flagellar M-ring protein FliF	Family
D [auth AA], E [auth AB], F [auth AC], G [auth AD], H [auth AE], D [auth AA], E [auth AB], F [auth AC], G [auth AD], H [auth AE], I [auth AF], J [auth AG], K [auth AH], L [auth AI], M [auth AJ], N [auth AK], O [auth AL], P [auth AM], Q [auth AN], R [auth AO]	IPR063443	FliF, N-terminal domain	Domain
C [auth A], S [auth B], T [auth C], U [auth AP], V [auth AQ], C [auth A], S [auth B], T [auth C], U [auth AP], V [auth AQ], W [auth AR]	IPR019776	Flagellar basal body rod protein, conserved site	Conserved Site
C [auth A], S [auth B], T [auth C], U [auth AP], V [auth AQ], C [auth A], S [auth B], T [auth C], U [auth AP], V [auth AQ], W [auth AR]	IPR020013	Flagellar hook-basal body protein, FlgE/F/G	Family
C [auth A], S [auth B], T [auth C], U [auth AP], V [auth AQ], C [auth A], S [auth B], T [auth C], U [auth AP], V [auth AQ], W [auth AR]	IPR010930	Flagellar basal-body/hook protein, C-terminal domain	Domain
C [auth A], S [auth B], T [auth C], U [auth AP], V [auth AQ], C [auth A], S [auth B], T [auth C], U [auth AP], V [auth AQ], W [auth AR]	IPR012834	Flagellar basal-body rod FlgG	Family
C [auth A], S [auth B], T [auth C], U [auth AP], V [auth AQ], C [auth A], S [auth B], T [auth C], U [auth AP], V [auth AQ], W [auth AR]	IPR053967	Flagellar hook protein FlgE/F/G-like, D1 domain	Domain
C [auth A], S [auth B], T [auth C], U [auth AP], V [auth AQ], C [auth A], S [auth B], T [auth C], U [auth AP], V [auth AQ], W [auth AR]	IPR001444	Flagellar basal body rod protein, N-terminal	Domain
C [auth A], S [auth B], T [auth C], U [auth AP], V [auth AQ], C [auth A], S [auth B], T [auth C], U [auth AP], V [auth AQ], W [auth AR]	IPR037925	Flagellar hook-basal body protein, FlgE/F/G-like	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.