Annotations: 8YVU

structure of Ige receptor

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	WD40	e8yvuH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
G	WD40	e8yvuG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
D	WD40	e8yvuD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
C	Lip_C	e8yvuC01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Lip_C	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C, D, G, H	PF11628	T-cell surface glycoprotein CD3 zeta chain (TCR_zetazeta)	T-cell surface glycoprotein CD3 zeta chain	-	Family
B, F	PF04103	CD20-like family (CD20)	CD20-like family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D, G, H	High affinity immunoglobulin epsilon receptor subunit gamma	protein-containing complex binding binding immunoglobulin binding IgG binding IgE binding identical protein binding protein binding protein homodimerization activity protein dimerization activity molecular transducer activity immunoglobulin receptor activity transmembrane signaling receptor activity signaling receptor activity immune receptor activity protein-containing complex binding binding immunoglobulin binding IgG binding IgE binding identical protein binding protein binding protein homodimerization activity protein dimerization activity molecular transducer activity immunoglobulin receptor activity transmembrane signaling receptor activity signaling receptor activity immune receptor activity IgE receptor activity	adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains lymphocyte mediated immunity response to stimulus immune response immune system process B cell mediated immunity leukocyte mediated immunity immunoglobulin mediated immune response adaptive immune response immune effector process cellular response to stimulus immune response-regulating cell surface receptor signaling pathway regulation of cellular process signaling adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains lymphocyte mediated immunity response to stimulus immune response immune system process B cell mediated immunity leukocyte mediated immunity immunoglobulin mediated immune response adaptive immune response immune effector process cellular response to stimulus immune response-regulating cell surface receptor signaling pathway regulation of cellular process signaling positive regulation of biological process cell communication positive regulation of response to stimulus immune response-activating signaling pathway immune response-regulating signaling pathway positive regulation of immune response regulation of immune system process signal transduction positive regulation of immune system process regulation of biological process cell surface receptor signaling pathway immune response-activating cell surface receptor signaling pathway biological regulation Fc receptor mediated stimulatory signaling pathway regulation of response to stimulus regulation of immune response cellular process activation of immune response localization import into cell receptor internalization transport receptor-mediated endocytosis endocytosis establishment of localization vesicle-mediated transport Fc receptor signaling pathway Fc-gamma receptor signaling pathway cell chemotaxis chemotaxis neutrophil chemotaxis response to external stimulus neutrophil migration granulocyte migration leukocyte migration cellular response to chemical stimulus taxis granulocyte chemotaxis response to chemical myeloid leukocyte migration cell migration cell motility leukocyte chemotaxis locomotion integrin-mediated signaling pathway biological process involved in interspecies interaction between organisms response to other organism defense response defense response to symbiont response to biotic stimulus defense response to other organism response to stress innate immune response response to external biotic stimulus antigen processing and presentation of exogenous peptide antigen via MHC class II antigen processing and presentation antigen processing and presentation of peptide or polysaccharide antigen via MHC class II antigen processing and presentation of peptide antigen via MHC class II antigen processing and presentation of exogenous peptide antigen antigen processing and presentation of peptide antigen antigen processing and presentation of exogenous antigen regulation of localization positive regulation of cellular component organization regulation of cellular component organization cellular component organization positive regulation of endocytosis phagocytosis cellular component organization or biogenesis positive regulation of cellular process regulation of endocytosis regulation of transport regulation of phagocytosis regulation of vesicle-mediated transport positive regulation of phagocytosis positive regulation of transport multicellular organismal process regulated exocytosis cellular localization nitrogen compound transport serotonin secretion involved in inflammatory response organic hydroxy compound transport secretion by cell serotonin secretion by platelet signal release establishment of localization in cell serotonin secretion serotonin production involved in inflammatory response production of molecular mediator involved in inflammatory response secretion platelet degranulation export from cell cell-cell signaling exocytosis exocytic process inflammatory response defense response to bacterium response to bacterium cellular response to low-density lipoprotein particle stimulus response to endogenous stimulus response to lipoprotein particle cellular response to lipoprotein particle stimulus Fc-epsilon receptor signaling pathway regulation of body fluid levels wound healing cell activation hemostasis regulation of cell activation blood coagulation regulation of platelet activation coagulation regulation of multicellular organismal process regulation of biological quality response to wounding platelet activation cellular developmental process cell development mononuclear cell differentiation lymphocyte activation lymphocyte differentiation cell activation involved in immune response leukocyte activation T cell activation involved in immune response T cell activation cell differentiation leukocyte activation involved in immune response anatomical structure development T cell differentiation lymphocyte activation involved in immune response developmental process hemopoiesis T cell differentiation involved in immune response leukocyte differentiation antigen processing and presentation of peptide antigen via MHC class I antigen processing and presentation of exogenous peptide antigen via MHC class I regulation of interleukin-4 production positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process regulation of cytokine production cytokine production positive regulation of macromolecule metabolic process regulation of biosynthetic process regulation of macromolecule metabolic process gene expression positive regulation of interleukin-4 production macromolecule biosynthetic process interleukin-4 production regulation of gene expression biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process positive regulation of cytokine production regulation of metabolic process response to cytokine cytokine-mediated signaling pathway response to peptide cellular response to cytokine stimulus interleukin-3-mediated signaling pathway neutrophil activation myeloid leukocyte activation myeloid cell activation involved in immune response neutrophil activation involved in immune response granulocyte activation	membrane-bounded organelle intracellular anatomical structure tertiary granule membrane membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system tertiary granule intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle membrane-bounded organelle intracellular anatomical structure tertiary granule membrane membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system tertiary granule intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle organelle membrane secretory granule membrane cell periphery protein-containing complex plasma membrane protein complex plasma membrane membrane protein complex Fc-gamma receptor III complex Fc receptor complex Fc-epsilon receptor I complex cell surface external side of plasma membrane side of membrane ficolin-1-rich granule membrane ficolin-1-rich granule
B, F	High affinity immunoglobulin epsilon receptor subunit beta	IgE binding protein-containing complex binding binding immunoglobulin binding	cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cellular process signal transduction cell communication immune response immune system process	cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex plasma membrane protein complex membrane protein complex Fc receptor complex Fc-epsilon receptor I complex cell surface external side of plasma membrane side of membrane
A, E	High affinity immunoglobulin epsilon receptor subunit alpha	high-affinity IgE receptor activity molecular transducer activity immunoglobulin receptor activity transmembrane signaling receptor activity signaling receptor activity immune receptor activity IgE receptor activity IgE binding protein-containing complex binding binding immunoglobulin binding	adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains lymphocyte mediated immunity response to stimulus immune response immune system process B cell mediated immunity leukocyte mediated immunity immunoglobulin mediated immune response adaptive immune response immune effector process cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains lymphocyte mediated immunity response to stimulus immune response immune system process B cell mediated immunity leukocyte mediated immunity immunoglobulin mediated immune response adaptive immune response immune effector process cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway signaling biological regulation cellular process signal transduction cell communication multicellular organismal process regulated exocytosis cellular localization transport eosinophil activation cell activation involved in immune response leukocyte degranulation myeloid leukocyte mediated immunity vesicle-mediated transport myeloid leukocyte activation leukocyte activation localization secretion by cell establishment of localization in cell leukocyte activation involved in immune response eosinophil degranulation eosinophil activation involved in immune response secretion cell activation export from cell establishment of localization myeloid cell activation involved in immune response exocytosis eosinophil mediated immunity granulocyte activation establishment of organelle localization organelle localization mast cell activation mast cell mediated immunity vacuolar localization mast cell degranulation mast cell activation involved in immune response lysosome localization type 2 immune response hypersensitivity defense response acute inflammatory response to antigenic stimulus type I hypersensitivity inflammatory response to antigenic stimulus response to stress inflammatory response acute inflammatory response	cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D, G, H	IPR042340	High affinity immunoglobulin epsilon receptor subunit gamma	Family
C, D, G, H	IPR003110	Phosphorylated immunoreceptor signalling ITAM	Repeat
C, D, G, H	IPR021663	T-cell surface glycoprotein CD3 zeta subunit/High affinity IgE receptor gamma subunit	Family
B, F	IPR030417	Membrane-spanning 4-domains subfamily A	Family
B, F	IPR007237	CD20-like, transmembrane domain	Domain
A, E	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A, E	IPR003598	Immunoglobulin subtype 2	Domain
A, E	IPR050488	Immunoglobulin Fc region receptor	Family
A, E	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, E	IPR003599	Immunoglobulin domain subtype	Domain
A, E	IPR007110	Immunoglobulin-like domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C, D, G, H	: P30273	Liver Cirrhosis, Experimental drug allergy malignant glioma MALT lymphoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm adrenal cortex carcinoma psoriasis B-cell chronic lymphocytic leukemia cutaneous lupus erythematosus esophageal adenocarcinoma inherited disease susceptibility large cell medulloblastoma lung carcinoma malignant mesothelioma Liver Cirrhosis, Experimental drug allergy malignant glioma MALT lymphoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm adrenal cortex carcinoma psoriasis B-cell chronic lymphocytic leukemia cutaneous lupus erythematosus esophageal adenocarcinoma inherited disease susceptibility large cell medulloblastoma lung carcinoma malignant mesothelioma medulloblastoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia allergic rhinitis subependymal giant cell astrocytoma breast cancer Down syndrome glioblastoma interstitial cystitis malignant ependymoma malignant pancreatic neoplasm non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma astrocytic tumor ulcerative colitis chronic obstructive pulmonary disease head and neck cancer invasive ductal breast carcinoma lung cancer
B, F	: Q01362	Asthma, Aspirin-Induced IgE responsiveness, atopic drug allergy asthma lung cancer osteosarcoma invasive ductal breast carcinoma lung carcinoma atopic eczema lung adenocarcinoma non-small cell lung carcinoma
A, E	: P12319	urticaria Drug Eruptions drug allergy pilocytic astrocytoma acute myeloid leukemia chronic obstructive pulmonary disease head and neck cancer lung cancer ovarian cancer psoriasis atopic eczema cutaneous lupus erythematosus esophageal adenocarcinoma interstitial cystitis malignant pancreatic neoplasm urticaria Drug Eruptions drug allergy pilocytic astrocytoma acute myeloid leukemia chronic obstructive pulmonary disease head and neck cancer lung cancer ovarian cancer psoriasis atopic eczema cutaneous lupus erythematosus esophageal adenocarcinoma interstitial cystitis malignant pancreatic neoplasm non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma tuberculosis Barrett esophagus exocrine pancreatic carcinoma invasive ductal breast carcinoma MALT lymphoma osteosarcoma

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F, G, H	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D, E A, B, C, D, E, F, G, H	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Immune Receptors	High affinity immunoglobulin epsilon receptor FcεRI complex

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.