8YKA | pdb_00008yka

Cryo-EM structure of P97-VCPIP1 complex

External Resource: Annotation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
G [auth 2],
H [auth 3],
I [auth 1]		PF02338OTU-like cysteine protease (OTU)OTU-like cysteine proteaseThis domain is found in a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly ...This domain is found in a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. This domain, despite containing a complete catalytic triad, do not react with Ub propargylamide and has no deubiquitinase activity [1].
Domain
G [auth 2],
H [auth 3],
I [auth 1]		PF19437VCIP135 N-terminal (VCIP135_N)VCIP135 N-terminalDeubiquitinating protein VCIP135 is required for the p97/p47 and p97/p37 pathways during Golgi biogenesis. It reverses ubiquitination events that occurs during mitotic disassembly, regulating Golgi membrane dynamics during mitosis. This entry represe ...Deubiquitinating protein VCIP135 is required for the p97/p47 and p97/p37 pathways during Golgi biogenesis. It reverses ubiquitination events that occurs during mitotic disassembly, regulating Golgi membrane dynamics during mitosis. This entry represents the N-terminal domain of VCIP135 that interacts with the WW domain-containing adaptor with coiled coil (WAC) and increases its deubiquitinating activity, necessary only for p97/p47-mediated Golgi membrane fusion [1,2].
Domain
PF02933Cell division protein 48 (CDC48), domain 2 (CDC48_2)Cell division protein 48 (CDC48), domain 2This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ...This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C-terminus. The VAT-N domain found in AAA ATPases Pfam:PF00004 is a substrate 185-residue recognition domain [1].
Domain
PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
PF02359Cell division protein 48 (CDC48), N-terminal domain (CDC48_N)Cell division protein 48 (CDC48), N-terminal domainThis domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ...This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the N-terminus. The VAT-N domain found in AAA ATPases Pfam:PF00004 is a substrate 185-residue recognition domain [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
G [auth 2],
H [auth 3],
I [auth 1]		Deubiquitinating protein VCPIP1
Transitional endoplasmic reticulum ATPase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
G [auth 2],
H [auth 3],
I [auth 1]		IPR039087Deubiquitinating protein VCPIP1Family
G [auth 2],
H [auth 3],
I [auth 1]		IPR003323OTU domainDomain
G [auth 2],
H [auth 3],
I [auth 1]		IPR045827Deubiquitinating protein VCPIP1, N-terminalDomain
G [auth 2],
H [auth 3],
I [auth 1]		IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
G [auth 2],
H [auth 3],
I [auth 1]		IPR048857OTU1, Ubl domainDomain
IPR003959ATPase, AAA-type, coreDomain
IPR005938AAA ATPase, CDC48 familyFamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR029067CDC48 domain 2-like superfamilyHomologous Superfamily
IPR003338CDC48, N-terminal subdomainDomain
IPR004201CDC48, domain 2Domain
IPR009010Aspartate decarboxylase-like domain superfamilyHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR041569AAA ATPase, AAA+ lid domainDomain
IPR050168AAA ATPase domain-containing proteinFamily
IPR003960ATPase, AAA-type, conserved siteConserved Site

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
G [auth 2],
H [auth 3],
I [auth 1]		Pharos:  Q96JH7
Pharos:  P55072