8YIO | pdb_00008yio

Cryo-EM structure of Saccharomyces cerevisiae bc1 complex in azoxystrobin-bound state


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth C]SCOP2B SuperfamilyTransmembrane di-heme cytochromes 8040302 3000517 SCOP2B (2022-06-29)
B [auth C]SCOP2B Superfamilya domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040299 3000966 SCOP2B (2022-06-29)
E [auth N]SCOP2B Superfamilya domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040299 3000966 SCOP2B (2022-06-29)
E [auth N]SCOP2B SuperfamilyTransmembrane di-heme cytochromes 8040302 3000517 SCOP2B (2022-06-29)
M [auth O]SCOP2B SuperfamilyCytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 8040305 3000762 SCOP2B (2022-06-29)
M [auth O]SCOP2B SuperfamilyCytochrome c 8040304 3000815 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCytochrome c 8040304 3000815 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 8040305 3000762 SCOP2B (2022-06-29)
P [auth R]SCOP2B Superfamily14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040315 3000797 SCOP2B (2022-06-29)
H [auth G]SCOP2B Superfamily14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040315 3000797 SCOP2B (2022-06-29)
Q [auth S]SCOP2B SuperfamilyUbiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040318 3000770 SCOP2B (2022-06-29)
I [auth H]SCOP2B SuperfamilyUbiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040318 3000770 SCOP2B (2022-06-29)
J [auth I]SCOP2B SuperfamilySubunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040319 3000779 SCOP2B (2022-06-29)
R [auth T]SCOP2B SuperfamilySubunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040319 3000779 SCOP2B (2022-06-29)
O [auth Q]SCOP2B SuperfamilyNon-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040312 3000806 SCOP2B (2022-06-29)
G [auth F]SCOP2B SuperfamilyNon-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040312 3000806 SCOP2B (2022-06-29)
N [auth P]SCOP2B SuperfamilyISP domain 8040307 3000233 SCOP2B (2022-06-29)
N [auth P]SCOP2B SuperfamilyISP transmembrane anchor 8040308 3000753 SCOP2B (2022-06-29)
F [auth E]SCOP2B SuperfamilyISP transmembrane anchor 8040308 3000753 SCOP2B (2022-06-29)
F [auth E]SCOP2B SuperfamilyISP domain 8040307 3000233 SCOP2B (2022-06-29)
L [auth M]SCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040300 3001831 SCOP2B (2022-06-29)
L [auth M]SCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040297 3001831 SCOP2B (2022-06-29)
C [auth B]SCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040297 3001831 SCOP2B (2022-06-29)
C [auth B]SCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040300 3001831 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040292 3001831 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040294 3001831 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040292 3001831 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040294 3001831 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth C]WD40e8yioC1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
E [auth N]WD40e8yioN1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
M [auth O]WD40e8yioO1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
DWD40e8yioD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
P [auth R]WD40e8yioR1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
H [auth G]WD40e8yioG1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
Q [auth S]WD40e8yioS1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
I [auth H]WD40e8yioH1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
J [auth I]WD40e8yioI1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
R [auth T]WD40e8yioT1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
O [auth Q]WD40e8yioQ1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
G [auth F]WD40e8yioF1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
N [auth P]WD40e8yioP2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
F [auth E]WD40e8yioE2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
L [auth M]WD40e8yioM1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
C [auth B]WD40e8yioB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
T [auth V]WD40e8yioV1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
S [auth U]WD40e8yioU1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
K [auth L]WD40e8yioL1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
AWD40e8yioA1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth C],
E [auth N]
PF00032Cytochrome b(C-terminal)/b6/petD (Cytochrom_B_C)Cytochrome b(C-terminal)/b6/petDDomain
B [auth C],
E [auth N]
PF00033Cytochrome b/b6/petB (Cytochrome_B)Cytochrome b/b6/petBDomain
D,
M [auth O]
PF02167Cytochrome C1 family (Cytochrom_C1)Cytochrome C1 family- Family
H [auth G],
P [auth R]
PF02271Ubiquinol-cytochrome C reductase complex 14kD subunit (UCR_14kD)Ubiquinol-cytochrome C reductase complex 14kD subunit- Family
I [auth H],
Q [auth S]
PF02939UcrQ family (UcrQ)UcrQ family- Family
J [auth I],
R [auth T]
PF05365Cytochrome b-c1 complex subunit 9 (UCR_UQCRX_QCR9)Cytochrome b-c1 complex subunit 9- Family
G [auth F],
O [auth Q]
PF02320Ubiquinol-cytochrome C reductase hinge protein (UCR_hinge)Ubiquinol-cytochrome C reductase hinge proteinThe ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex [1]. This Pfam family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c ...The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex [1]. This Pfam family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c complex.
Domain
F [auth E],
N [auth P]
PF02921Ubiquinol cytochrome reductase transmembrane region (UCR_TM)Ubiquinol cytochrome reductase transmembrane region- Family
F [auth E],
N [auth P]
PF00355Rieske [2Fe-2S] domain (Rieske)Rieske [2Fe-2S] domainThe rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ...The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in this motif form a disulphide bridge, which stabilises the protein [4].
Domain
C [auth B],
L [auth M]
PF00675Insulinase (Peptidase family M16) (Peptidase_M16)Insulinase (Peptidase family M16)- Family
S [auth U],
T [auth V]
PF09796Ubiquinol-cytochrome-c reductase complex subunit (QCR10) (QCR10)Ubiquinol-cytochrome-c reductase complex subunit (QCR10)- Family
A,
K [auth L]
PF05193Peptidase M16 inactive domain (Peptidase_M16_C)Peptidase M16 inactive domainPeptidase M16 consists of two structurally related domains. One is the active peptidase, whereas the other is inactive. The two domains hold the substrate like a clamp [1]. Domain
A,
K [auth L]
PF00675Insulinase (Peptidase family M16) (Peptidase_M16)Insulinase (Peptidase family M16)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth C],
E [auth N]
Cytochrome b
D,
M [auth O]
Cytochrome c1, heme protein, mitochondrial
H [auth G],
P [auth R]
Cytochrome b-c1 complex subunit 7-
I [auth H],
Q [auth S]
Cytochrome b-c1 complex subunit 8
J [auth I],
R [auth T]
Cytochrome b-c1 complex subunit 9, mitochondrial-
G [auth F],
O [auth Q]
QCR6 isoform 1-
F [auth E],
N [auth P]
Cytochrome b-c1 complex subunit Rieske, mitochondrial
C [auth B],
L [auth M]
Cytochrome b-c1 complex subunit 2, mitochondrial
S [auth U],
T [auth V]
Cytochrome b-c1 complex subunit 10, mitochondrial-
A,
K [auth L]
COR1 isoform 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth C],
E [auth N]
IPR036150Cytochrome b/b6, C-terminal domain superfamilyHomologous Superfamily
B [auth C],
E [auth N]
IPR027387Cytochrome b/b6-like domain superfamilyHomologous Superfamily
B [auth C],
E [auth N]
IPR048260Cytochrome b/b6, C-terminal domain, eukaryotic/bacterialDomain
B [auth C],
E [auth N]
IPR016174Di-haem cytochrome, transmembraneHomologous Superfamily
B [auth C],
E [auth N]
IPR005798Cytochrome b/b6, C-terminalDomain
B [auth C],
E [auth N]
IPR048259Cytochrome b/b6, N-terminal domain, eukaryotic/bacterialDomain
B [auth C],
E [auth N]
IPR030689Cytochrome bFamily
B [auth C],
E [auth N]
IPR005797Cytochrome b/b6, N-terminal domainDomain
D,
M [auth O]
IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
D,
M [auth O]
IPR002326Cytochrome c1Family
D,
M [auth O]
IPR009056Cytochrome c-like domainDomain
D,
M [auth O]
IPR021157Cytochrome c1, transmembrane anchor, C-terminalHomologous Superfamily
H [auth G],
P [auth R]
IPR003197Cytochrome b-c1 complex subunit 7Family
H [auth G],
P [auth R]
IPR036544Cytochrome b-c1 complex subunit 7 superfamilyHomologous Superfamily
I [auth H],
Q [auth S]
IPR004205Cytochrome b-c1 complex subunit 8Family
I [auth H],
Q [auth S]
IPR036642Cytochrome b-c1 complex subunit 8 superfamilyHomologous Superfamily
J [auth I],
R [auth T]
IPR008027Cytochrome b-c1 complex subunit 9Family
J [auth I],
R [auth T]
IPR036656Cytochrome b-c1 complex subunit 9 superfamilyHomologous Superfamily
G [auth F],
O [auth Q]
IPR023184Ubiquinol-cytochrome C reductase hinge domainDomain
G [auth F],
O [auth Q]
IPR036811Ubiquinol-cytochrome C reductase hinge domain superfamilyHomologous Superfamily
F [auth E],
N [auth P]
IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilyHomologous Superfamily
F [auth E],
N [auth P]
IPR014349Rieske iron-sulphur proteinFamily
F [auth E],
N [auth P]
IPR004192Cytochrome b-c1 complex subunit Rieske, transmembrane domainDomain
F [auth E],
N [auth P]
IPR017941Rieske [2Fe-2S] iron-sulphur domainDomain
F [auth E],
N [auth P]
IPR005805Rieske iron-sulphur protein, C-terminalDomain
F [auth E],
N [auth P]
IPR037008Cytochrome bc1 complex subunit Rieske, transmembrane domain superfamilyHomologous Superfamily
F [auth E],
N [auth P]
IPR006317Ubiquinol-cytochrome c reductase, iron-sulphur subunitDomain
C [auth B],
L [auth M]
IPR011249Metalloenzyme, LuxS/M16 peptidase-likeHomologous Superfamily
C [auth B],
L [auth M]
IPR050361Mitochondrial Processing Peptidase/Ubiquinol-cytochrome c Reductase ComplexFamily
C [auth B],
L [auth M]
IPR011765Peptidase M16, N-terminalDomain
C [auth B],
L [auth M]
IPR001431Peptidase M16, zinc-binding siteBinding Site
S [auth U],
T [auth V]
IPR019182Cytochrome b-c1 complex subunit 10, fungiFamily
A,
K [auth L]
IPR007863Peptidase M16, C-terminalDomain
A,
K [auth L]
IPR011249Metalloenzyme, LuxS/M16 peptidase-likeHomologous Superfamily
A,
K [auth L]
IPR050361Mitochondrial Processing Peptidase/Ubiquinol-cytochrome c Reductase ComplexFamily
A,
K [auth L]
IPR011765Peptidase M16, N-terminalDomain