8YEH | pdb_00008yeh

HPV16 L1 pentamer in complex with Fab F5-196

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
O	UCR_hinge	e8yehO1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
L [auth N]	UCR_hinge	e8yehN1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
I [auth M]	UCR_hinge	e8yehM1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
F [auth L]	UCR_hinge	e8yehL1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
C [auth F]	LRR_1, LRR_5, LRR_6, LRR_8	e8yehF01	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: LRR_1, LRR_5, LRR_6, LRR_8	ECOD (v295)
N [auth K]	UCR_hinge	e8yehK1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
K [auth J]	UCR_hinge	e8yehJ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
H [auth I]	UCR_hinge	e8yehI1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
E [auth H]	UCR_hinge	e8yehH1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
B	LRR_1, LRR_5, LRR_6, LRR_8	e8yehB01	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: LRR_1, LRR_5, LRR_6, LRR_8	ECOD (v295)
M [auth G]	UCR_hinge	e8yehG1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
J [auth E]	UCR_hinge	e8yehE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
G [auth D]	UCR_hinge	e8yehD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
D [auth C]	UCR_hinge	e8yehC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
A	LRR_1, LRR_5, LRR_6, LRR_8	e8yehA01	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: LRR_1, LRR_5, LRR_6, LRR_8	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth F], F [auth L], I [auth M], L [auth N], O	Major capsid protein L1	structural molecule activity	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host endocytosis involved in viral entry into host cell	viral capsid icosahedral viral capsid T=7 icosahedral viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
B, E [auth H], H [auth I], K [auth J], N [auth K]	light chain of F5-196	-	-	-
A, D [auth C], G [auth D], J [auth E], M [auth G]	heavy chain of F5-196	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth F], F [auth L], I [auth M], L [auth N], O	IPR036973	Major capsid L1 (late) superfamily, Papillomavirus	Homologous Superfamily
C [auth F], F [auth L], I [auth M], L [auth N], O	IPR011222	Double-stranded DNA virus, group I, capsid	Homologous Superfamily
C [auth F], F [auth L], I [auth M], L [auth N], O	IPR002210	Major capsid L1 (late) protein, Papillomavirus	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.