8XQB | pdb_00008xqb

Mature virion portal vertex of bacteriophage lambda

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
XA [auth N1]	SCOP2B Superfamily	Head decoration protein D (gpD, major capsid protein D)	8043128	3001943	SCOP2B (2022-06-29)
WA [auth J1]	SCOP2B Superfamily	Head decoration protein D (gpD, major capsid protein D)	8043128	3001943	SCOP2B (2022-06-29)
VA [auth I1]	SCOP2B Superfamily	Head decoration protein D (gpD, major capsid protein D)	8043128	3001943	SCOP2B (2022-06-29)
UA [auth H1]	SCOP2B Superfamily	Head decoration protein D (gpD, major capsid protein D)	8043128	3001943	SCOP2B (2022-06-29)
SB [auth N4]	SCOP2B Superfamily	Head decoration protein D (gpD, major capsid protein D)	8043128	3001943	SCOP2B (2022-06-29)
RB [auth J4]	SCOP2B Superfamily	Head decoration protein D (gpD, major capsid protein D)	8043128	3001943	SCOP2B (2022-06-29)
QB [auth I4]	SCOP2B Superfamily	Head decoration protein D (gpD, major capsid protein D)	8043128	3001943	SCOP2B (2022-06-29)
QA [auth N0]	SCOP2B Superfamily	Head decoration protein D (gpD, major capsid protein D)	8043128	3001943	SCOP2B (2022-06-29)
PB [auth H4]	SCOP2B Superfamily	Head decoration protein D (gpD, major capsid protein D)	8043128	3001943	SCOP2B (2022-06-29)
PA [auth J0]	SCOP2B Superfamily	Head decoration protein D (gpD, major capsid protein D)	8043128	3001943	SCOP2B (2022-06-29)
OA [auth I0]	SCOP2B Superfamily	Head decoration protein D (gpD, major capsid protein D)	8043128	3001943	SCOP2B (2022-06-29)
NA [auth H0]	SCOP2B Superfamily	Head decoration protein D (gpD, major capsid protein D)	8043128	3001943	SCOP2B (2022-06-29)
LB [auth N3]	SCOP2B Superfamily	Head decoration protein D (gpD, major capsid protein D)	8043128	3001943	SCOP2B (2022-06-29)
KB [auth J3]	SCOP2B Superfamily	Head decoration protein D (gpD, major capsid protein D)	8043128	3001943	SCOP2B (2022-06-29)
JB [auth I3]	SCOP2B Superfamily	Head decoration protein D (gpD, major capsid protein D)	8043128	3001943	SCOP2B (2022-06-29)
IB [auth H3]	SCOP2B Superfamily	Head decoration protein D (gpD, major capsid protein D)	8043128	3001943	SCOP2B (2022-06-29)
EB [auth N2]	SCOP2B Superfamily	Head decoration protein D (gpD, major capsid protein D)	8043128	3001943	SCOP2B (2022-06-29)
DB [auth J2]	SCOP2B Superfamily	Head decoration protein D (gpD, major capsid protein D)	8043128	3001943	SCOP2B (2022-06-29)
CB [auth I2]	SCOP2B Superfamily	Head decoration protein D (gpD, major capsid protein D)	8043128	3001943	SCOP2B (2022-06-29)
BB [auth H2]	SCOP2B Superfamily	Head decoration protein D (gpD, major capsid protein D)	8043128	3001943	SCOP2B (2022-06-29)
ZA [auth G2]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
YA [auth A2]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
TA [auth C1]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
SA [auth G1]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
RA [auth A1]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
OB [auth C4]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
NB [auth G4]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
MB [auth A4]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
MA [auth C0]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
LA [auth G0]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
KA [auth A0]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
HB [auth C3]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
GB [auth G3]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
FB [auth A3]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
AB [auth C2]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
V [auth U3]	SCOP2B Superfamily	Phage tail protein-like	8035093	3001913	SCOP2B (2022-06-29)
P [auth U2]	SCOP2B Superfamily	Phage tail protein-like	8035093	3001913	SCOP2B (2022-06-29)
J [auth U1]	SCOP2B Superfamily	Phage tail protein-like	8035093	3001913	SCOP2B (2022-06-29)
HA [auth U5]	SCOP2B Superfamily	Phage tail protein-like	8035093	3001913	SCOP2B (2022-06-29)
D [auth U]	SCOP2B Superfamily	Phage tail protein-like	8035093	3001913	SCOP2B (2022-06-29)
BA [auth U4]	SCOP2B Superfamily	Phage tail protein-like	8035093	3001913	SCOP2B (2022-06-29)
Z [auth W4]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
U [auth w3]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
T [auth W3]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
O [auth w2]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
N [auth W2]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
I [auth w1]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
H [auth W1]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
GA [auth w5]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
FA [auth W5]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
C [auth w]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
B [auth W]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
AA [auth w4]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
Y [auth f4]	SCOP2B Superfamily	Phage tail proteins	8040058	3000268	SCOP2B (2022-06-29)
S [auth f3]	SCOP2B Superfamily	Phage tail proteins	8040058	3000268	SCOP2B (2022-06-29)
M [auth f2]	SCOP2B Superfamily	Phage tail proteins	8040058	3000268	SCOP2B (2022-06-29)
G [auth f1]	SCOP2B Superfamily	Phage tail proteins	8040058	3000268	SCOP2B (2022-06-29)
EA [auth f5]	SCOP2B Superfamily	Phage tail proteins	8040058	3000268	SCOP2B (2022-06-29)
A [auth f]	SCOP2B Superfamily	Phage tail proteins	8040058	3000268	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
BB [auth H2], CB [auth I2], DB [auth J2], EB [auth N2], IB [auth H3], BB [auth H2], CB [auth I2], DB [auth J2], EB [auth N2], IB [auth H3], JB [auth I3], KB [auth J3], LB [auth N3], NA [auth H0], OA [auth I0], PA [auth J0], PB [auth H4], QA [auth N0], QB [auth I4], RB [auth J4], SB [auth N4], UA [auth H1], VA [auth I1], WA [auth J1], XA [auth N1]	PF02924	Bacteriophage lambda head decoration protein D (HDPD)	Bacteriophage lambda head decoration protein D		Domain
AB [auth C2], FB [auth A3], GB [auth G3], HB [auth C3], KA [auth A0], AB [auth C2], FB [auth A3], GB [auth G3], HB [auth C3], KA [auth A0], LA [auth G0], MA [auth C0], MB [auth A4], NB [auth G4], OB [auth C4], RA [auth A1], SA [auth G1], TA [auth C1], YA [auth A2], ZA [auth G2]	PF03864	Phage major capsid protein E (Phage_cap_E)	Phage major capsid protein E	-	Family
CA [auth B4], DA [auth b4], E [auth B], F [auth b], IA [auth B5], CA [auth B4], DA [auth b4], E [auth B], F [auth b], IA [auth B5], JA [auth b5], K [auth B1], L [auth b1], Q [auth B2], R [auth b2], W [auth B3], X [auth b3]	PF05136	Phage portal protein, lambda family (Phage_portal_2)	Phage portal protein, lambda family	-	Family
BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], V [auth U3]	PF06141	Phage minor tail protein U (Phage_tail_U)	Phage minor tail protein U	Tail fibre component U of bacteriophage.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
BB [auth H2], CB [auth I2], DB [auth J2], EB [auth N2], IB [auth H3], BB [auth H2], CB [auth I2], DB [auth J2], EB [auth N2], IB [auth H3], JB [auth I3], KB [auth J3], LB [auth N3], NA [auth H0], OA [auth I0], PA [auth J0], PB [auth H4], QA [auth N0], QB [auth I4], RB [auth J4], SB [auth N4], UA [auth H1], VA [auth I1], WA [auth J1], XA [auth N1]	Capsid decoration protein	-	virion assembly viral process viral life cycle viral genome packaging viral DNA genome packaging	viral capsid virion component viral capsid, decoration host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part
AB [auth C2], FB [auth A3], GB [auth G3], HB [auth C3], KA [auth A0], AB [auth C2], FB [auth A3], GB [auth G3], HB [auth C3], KA [auth A0], LA [auth G0], MA [auth C0], MB [auth A4], NB [auth G4], OB [auth C4], RA [auth A1], SA [auth G1], TA [auth C1], YA [auth A2], ZA [auth G2]	Major capsid protein	-	-	viral capsid icosahedral viral capsid T=7 icosahedral viral capsid virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part
CA [auth B4], DA [auth b4], E [auth B], F [auth b], IA [auth B5], CA [auth B4], DA [auth b4], E [auth B], F [auth b], IA [auth B5], JA [auth b5], K [auth B1], L [auth b1], Q [auth B2], R [auth b2], W [auth B3], X [auth b3]	Portal protein B	DNA binding binding nucleic acid binding structural molecule activity	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly	protein-containing complex viral capsid virion component viral portal complex
BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], V [auth U3]	Tail tube terminator protein	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly viral tail assembly	host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part virus tail virion component
AA [auth w4], B [auth W], C [auth w], FA [auth W5], GA [auth w5], AA [auth w4], B [auth W], C [auth w], FA [auth W5], GA [auth w5], H [auth W1], I [auth w1], N [auth W2], O [auth w2], T [auth W3], U [auth w3], Z [auth W4]	Head completion protein	-	viral process viral life cycle	virion component
A [auth f], EA [auth f5], G [auth f1], M [auth f2], S [auth f3], A [auth f], EA [auth f5], G [auth f1], M [auth f2], S [auth f3], Y [auth f4]	Head-tail connector protein FII	-	virion assembly viral process viral life cycle	virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
BB [auth H2], CB [auth I2], DB [auth J2], EB [auth N2], IB [auth H3], BB [auth H2], CB [auth I2], DB [auth J2], EB [auth N2], IB [auth H3], JB [auth I3], KB [auth J3], LB [auth N3], NA [auth H0], OA [auth I0], PA [auth J0], PB [auth H4], QA [auth N0], QB [auth I4], RB [auth J4], SB [auth N4], UA [auth H1], VA [auth I1], WA [auth J1], XA [auth N1]	IPR004195	Head decoration protein D	Family
BB [auth H2], CB [auth I2], DB [auth J2], EB [auth N2], IB [auth H3], BB [auth H2], CB [auth I2], DB [auth J2], EB [auth N2], IB [auth H3], JB [auth I3], KB [auth J3], LB [auth N3], NA [auth H0], OA [auth I0], PA [auth J0], PB [auth H4], QA [auth N0], QB [auth I4], RB [auth J4], SB [auth N4], UA [auth H1], VA [auth I1], WA [auth J1], XA [auth N1]	IPR036630	Head decoration protein D superfamily	Homologous Superfamily
AB [auth C2], FB [auth A3], GB [auth G3], HB [auth C3], KA [auth A0], AB [auth C2], FB [auth A3], GB [auth G3], HB [auth C3], KA [auth A0], LA [auth G0], MA [auth C0], MB [auth A4], NB [auth G4], OB [auth C4], RA [auth A1], SA [auth G1], TA [auth C1], YA [auth A2], ZA [auth G2]	IPR005564	Major capsid protein GpE	Family
CA [auth B4], DA [auth b4], E [auth B], F [auth b], IA [auth B5], CA [auth B4], DA [auth b4], E [auth B], F [auth b], IA [auth B5], JA [auth b5], K [auth B1], L [auth b1], Q [auth B2], R [auth b2], W [auth B3], X [auth b3]	IPR006429	Phage portal protein, lambda family	Family
BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], V [auth U3]	IPR035934	Phage tail protein-like superfamily	Homologous Superfamily
BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], V [auth U3]	IPR009312	Minor tail protein U-like	Family
BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], V [auth U3]	IPR038512	GpU-like superfamily	Homologous Superfamily
AA [auth w4], B [auth W], C [auth w], FA [auth W5], GA [auth w5], AA [auth w4], B [auth W], C [auth w], FA [auth W5], GA [auth w5], H [auth W1], I [auth w1], N [auth W2], O [auth w2], T [auth W3], U [auth w3], Z [auth W4]	IPR036626	Head-to-tail joining protein W superfamily	Homologous Superfamily
AA [auth w4], B [auth W], C [auth w], FA [auth W5], GA [auth w5], AA [auth w4], B [auth W], C [auth w], FA [auth W5], GA [auth w5], H [auth W1], I [auth w1], N [auth W2], O [auth w2], T [auth W3], U [auth w3], Z [auth W4]	IPR004174	Head-to-tail joining protein W	Family
A [auth f], EA [auth f5], G [auth f1], M [auth f2], S [auth f3], A [auth f], EA [auth f5], G [auth f1], M [auth f2], S [auth f3], Y [auth f4]	IPR053734	Bacteriophage Head-Tail Connecting Superfamily	Homologous Superfamily
A [auth f], EA [auth f5], G [auth f1], M [auth f2], S [auth f3], A [auth f], EA [auth f5], G [auth f1], M [auth f2], S [auth f3], Y [auth f4]	IPR008018	Bacteriophage tail attachment protein FII	Family