8X8T | pdb_00008x8t

NMR structure of p75NTR juxtamembrane domain in complex with RhoGDI N-terminal domain containing a phosphorylation-mimicking S34D mutation

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e8x8tA01	A: a/b three-layered sandwiches	X: ATP-grasp_6	H: ATP-grasp_6	T: ATP-grasp_6	F:	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Tumor necrosis factor receptor superfamily member 16	small GTPase binding protein binding binding enzyme binding GTPase binding amyloid-beta binding peptide binding molecular transducer activity coreceptor activity signaling receptor activity neurotrophin binding nerve growth factor binding growth factor binding calmodulin binding small GTPase binding protein binding binding enzyme binding GTPase binding amyloid-beta binding peptide binding molecular transducer activity coreceptor activity signaling receptor activity neurotrophin binding nerve growth factor binding growth factor binding calmodulin binding ubiquitin protein ligase binding ubiquitin-like protein ligase binding transmembrane signaling receptor activity death receptor activity	cellular homeostasis chemical homeostasis homeostatic process glucose homeostasis carbohydrate homeostasis intracellular chemical homeostasis intracellular glucose homeostasis developmental process multicellular organism development multicellular organismal process central nervous system development anatomical structure development nervous system development system development cellular homeostasis chemical homeostasis homeostatic process glucose homeostasis carbohydrate homeostasis intracellular chemical homeostasis intracellular glucose homeostasis developmental process multicellular organism development multicellular organismal process central nervous system development anatomical structure development nervous system development system development trans-synaptic signaling regulation of biological process regulation of signaling regulation of cellular process modulation of chemical synaptic transmission signaling biological regulation cell-cell signaling presynaptic modulation of chemical synaptic transmission chemical synaptic transmission cell communication synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication cellular process cellular response to stimulus positive regulation of cell communication positive regulation of signal transduction response to stimulus positive regulation of biological process regulation of signal transduction regulation of programmed cell death positive regulation of apoptotic signaling pathway positive regulation of response to stimulus signal transduction positive regulation of cellular process positive regulation of programmed cell death regulation of apoptotic process cell death positive regulation of apoptotic process apoptotic signaling pathway regulation of response to stimulus apoptotic process programmed cell death positive regulation of signaling regulation of apoptotic signaling pathway cell surface receptor signaling pathway extrinsic apoptotic signaling pathway epithelium development epidermis development molting cycle process hair cycle epidermis morphogenesis animal organ development morphogenesis of an epithelium tissue development tissue morphogenesis anatomical structure morphogenesis skin development skin epidermis development hair follicle development molting cycle hair cycle process hair follicle morphogenesis positive regulation of DNA-templated transcription RNA metabolic process positive regulation of miRNA transcription positive regulation of miRNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process positive regulation of metabolic process regulation of RNA metabolic process miRNA transcription positive regulation of biosynthetic process regulation of miRNA metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process miRNA metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process regulation of miRNA transcription rhythmic process circadian regulation of gene expression circadian rhythm fibroblast proliferation cell population proliferation regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis endothelial cell proliferation negative regulation of biological process angiogenesis negative regulation of endothelial cell proliferation tube morphogenesis negative regulation of cellular process epithelial cell proliferation blood vessel development negative regulation of cell population proliferation negative regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis blood vessel morphogenesis tube development blood vessel endothelial cell proliferation involved in sprouting angiogenesis sprouting angiogenesis vasculature development circulatory system development regulation of endothelial cell proliferation regulation of cell population proliferation anatomical structure formation involved in morphogenesis regulation of epithelial cell proliferation negative regulation of epithelial cell proliferation negative regulation of locomotion regulation of cell motility regulation of locomotion regulation of cell migration negative regulation of cell motility cell migration cell motility negative regulation of cell migration locomotion nerve development small GTPase-mediated signal transduction Rho protein signal transduction intracellular signal transduction intracellular signaling cassette artery development aorta development dorsal aorta development response to fibroblast growth factor cellular response to growth factor stimulus negative regulation of signaling negative regulation of cellular response to growth factor stimulus cell surface receptor protein tyrosine kinase signaling pathway negative regulation of cell communication cellular response to endogenous stimulus enzyme-linked receptor protein signaling pathway negative regulation of fibroblast growth factor receptor signaling pathway negative regulation of response to stimulus response to endogenous stimulus regulation of cellular response to growth factor stimulus negative regulation of signal transduction fibroblast growth factor receptor signaling pathway response to growth factor cellular response to fibroblast growth factor stimulus regulation of fibroblast growth factor receptor signaling pathway regulation of localization regulation of protein localization positive regulation of protein localization to nucleus regulation of protein localization to nucleus protein localization to nucleus localization macromolecule localization protein localization to organelle positive regulation of protein localization intracellular protein localization regulation of animal organ morphogenesis regulation of developmental process regulation of odontogenesis of dentin-containing tooth regulation of odontogenesis odontogenesis of dentin-containing tooth odontogenesis positive regulation of odontogenesis positive regulation of developmental process positive regulation of odontogenesis of dentin-containing tooth positive regulation of animal organ morphogenesis positive regulation of multicellular organismal process animal organ morphogenesis regulation of multicellular organismal process regulation of anatomical structure morphogenesis positive regulation of cell population proliferation regulation of fibroblast proliferation positive regulation of fibroblast proliferation detection of external stimulus detection of stimulus detection of temperature stimulus response to external stimulus response to abiotic stimulus response to temperature stimulus detection of abiotic stimulus cellular localization establishment of protein localization transport intracellular transport establishment of localization protein transport establishment of localization in cell intracellular protein transport neuron apoptotic process axonogenesis cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis cellular component organization neurogenesis cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation cellular component organization or biogenesis plasma membrane bounded cell projection organization axon guidance axon development cell morphogenesis involved in neuron differentiation generation of neurons neuron projection guidance neuron development positive regulation of endothelial cell apoptotic process endothelial cell apoptotic process regulation of endothelial cell apoptotic process regulation of hair cycle regulation of multicellular organismal development negative regulation of developmental process regulation of hair follicle development negative regulation of hair follicle development negative regulation of multicellular organismal process cellular response to nitrogen compound response to oxygen-containing compound response to nitrogen compound cellular response to amyloid-beta cellular response to oxygen-containing compound cellular response to chemical stimulus response to chemical response to amyloid-beta	somatodendritic compartment cell body cellular anatomical structure perikaryon neuronal cell body membrane cell-cell junction anchoring junction cell junction intracellular anatomical structure cytoplasm cytosol neuromuscular junction synapse somatodendritic compartment cell body cellular anatomical structure perikaryon neuronal cell body membrane cell-cell junction anchoring junction cell junction intracellular anatomical structure cytoplasm cytosol neuromuscular junction synapse neuron spine neuron projection dendritic spine plasma membrane bounded cell projection cell projection postsynapse dendrite dendritic tree cell surface cell periphery plasma membrane presynapse growth cone axon distal axon site of polarized growth membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen endosome intracellular vesicle endomembrane system cytoplasmic vesicle vesicle extracellular region postsynaptic density neuron to neuron synapse postsynaptic specialization asymmetric synapse
A	Rho GDP-dissociation inhibitor 1	GTPase regulator activity enzyme regulator activity GDP-dissociation inhibitor activity nucleoside-triphosphatase regulator activity Rho GDP-dissociation inhibitor activity molecular function regulator activity enzyme activator activity GTPase activator activity molecular function activator activity	cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus semaphorin-plexin signaling pathway signaling biological regulation cell communication cellular process signal transduction regulation of localization localization regulation of protein localization cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus semaphorin-plexin signaling pathway signaling biological regulation cell communication cellular process signal transduction regulation of localization localization regulation of protein localization macromolecule localization intracellular protein localization negative regulation of programmed cell death regulation of apoptotic process negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death small GTPase-mediated signal transduction Rho protein signal transduction intracellular signal transduction intracellular signaling cassette cellular localization transport regulation of transport regulation of synaptic vesicle cycle synaptic vesicle cycle regulation of vesicle-mediated transport establishment of localization vesicle-mediated transport vesicle-mediated transport in synapse establishment of localization in cell regulation of signaling regulation of small GTPase mediated signal transduction regulation of signal transduction regulation of Rho protein signal transduction regulation of intracellular signal transduction regulation of response to stimulus regulation of cell communication	cell periphery cellular anatomical structure immunological synapse plasma membrane membrane intracellular organelle intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle extracellular exosome membrane-bounded organelle extracellular vesicle cell periphery cellular anatomical structure immunological synapse plasma membrane membrane intracellular organelle intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region vesicle extracellular membrane-bounded organelle cytoplasm cytosol Schaffer collateral - CA1 synapse synapse cell junction nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR000488	Death domain	Domain
B	IPR022325	Tumour necrosis factor receptor 16	Family
B	IPR041448	Tumor necrosis factor receptor member 16, transmembrane domain	Domain
B	IPR034046	Tumor necrosis factor receptor 16, N-terminal	Domain
B	IPR011029	Death-like domain superfamily	Homologous Superfamily
B	IPR052302	Neurotrophin receptor-related death domain-containing protein	Family
B	IPR001368	TNFR/NGFR cysteine-rich region	Domain
A	IPR024792	Rho GDP-dissociation inhibitor domain superfamily	Homologous Superfamily
A	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A	IPR000406	Rho protein GDP-dissociation inhibitor	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	Pharos: P08138	visual epilepsy Nerve Degeneration prostate cancer pilocytic astrocytoma psoriasis breast cancer depressive disorder heart disease medulloblastoma schizophrenia adrenal cortex carcinoma neurodegenerative disease osteosarcoma malignant glioma
A	Pharos: P52565	nephrotic syndrome, type 8 breast carcinoma HIV infectious disease keloid Neoplasm Metastasis Pick disease acute myeloid leukemia chronic obstructive pulmonary disease large cell medulloblastoma malignant mesothelioma polycystic ovary syndrome breast cancer congestive heart failure lung cancer medulloblastoma nephrotic syndrome, type 8 breast carcinoma HIV infectious disease keloid Neoplasm Metastasis Pick disease acute myeloid leukemia chronic obstructive pulmonary disease large cell medulloblastoma malignant mesothelioma polycystic ovary syndrome breast cancer congestive heart failure lung cancer medulloblastoma ovarian cancer psoriasis glioblastoma malignant glioma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.