8VS8 | pdb_00008vs8

Crystal structure of ADI-19425 Fab in complex with anti-idiotypic 1D3 Fab

External Resource: Annotation

Domain Annotation: ECOD Classification
SAbDab Antibody Annotation
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
BA [auth b]	V-set	e8vs8b1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
D	TGF_beta	e8vs8D01	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: TGF_beta	ECOD (v295)
FA [auth f]	V-set	e8vs8f1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
H	V-set	e8vs8H1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
T	V-set	e8vs8T1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
X	V-set	e8vs8X1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
P	V-set	e8vs8P1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
L	V-set	e8vs8L1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
AA [auth a]	V-set	e8vs8a1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
C	TGF_beta	e8vs8C01	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: TGF_beta	ECOD (v295)
EA [auth e]	V-set	e8vs8e1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
O	V-set	e8vs8O1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
S	V-set	e8vs8S1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
W	V-set	e8vs8W1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
K	V-set	e8vs8K1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
G	V-set	e8vs8G1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
B	V-set	e8vs8B1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
F	V-set	e8vs8F1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
N	V-set	e8vs8N1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
R	V-set	e8vs8R1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
V	V-set	e8vs8V1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
Z	V-set	e8vs8Z1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
J	V-set	e8vs8J1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
DA [auth d]	V-set	e8vs8d1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
CA [auth c]	V-set	e8vs8c1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
E	V-set	e8vs8E1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
I	V-set	e8vs8I1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
M	V-set	e8vs8M1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
Q	V-set	e8vs8Q1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
Y	V-set	e8vs8Y1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
U	V-set	e8vs8U1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
A	V-set	e8vs8A1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
BA [auth b], D, FA [auth f], H, L, BA [auth b], D, FA [auth f], H, L, P, T, X	Heavy Chain	IGHV1	-	-	SAbDab (2026-06-26)
AA [auth a], C, EA [auth e], G, K, AA [auth a], C, EA [auth e], G, K, O, S, W	Light Chain	IGKV5	Kappa	-	SAbDab (2026-06-26)
B, DA [auth d], F, J, N, B, DA [auth d], F, J, N, R, V, Z	Light Chain	IGLV1	Lambda	-	SAbDab (2026-06-26)
A, CA [auth c], E, I, M, A, CA [auth c], E, I, M, Q, U, Y	Heavy Chain	IGHV3	-	-	SAbDab (2026-06-26)

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
BA [auth b], D, FA [auth f], H, L, BA [auth b], D, FA [auth f], H, L, P, T, X	PCA	Parent Component: GLN : AA0031 : 2-pyrrolidone-5-carboxylic acid (Gln) MOD:00040 , 2-pyrrolidone-5-carboxylic acid (Glu) MOD:00420
B, DA [auth d], F, J, N, B, DA [auth d], F, J, N, R, V, Z	PCA	Parent Component: GLN : AA0031 , AA0031 : 2-pyrrolidone-5-carboxylic acid (Gln) MOD:00040 , 2-pyrrolidone-5-carboxylic acid (Glu) MOD:00420 , 2-pyrrolidone-5-carboxylic acid (Gln) MOD:00040 , 2-pyrrolidone-5-carboxylic acid (Glu) MOD:00420

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.