8VK4

Structure of mouse RyR1 in complex with S100A1 (high-Ca2+/CFF/ATP dataset)

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth E], D [auth F], E [auth G], F [auth H]	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase (FKBP_C)	FKBP-type peptidyl-prolyl cis-trans isomerase	-	Domain
B [auth I], C [auth J], K, L, M [auth N], B [auth I], C [auth J], K, L, M [auth N], N [auth M], O, P	PF01023	S-100/ICaBP type calcium binding domain (S_100)	S-100/ICaBP type calcium binding domain	The S-100 domain is a subfamily of the EF-hand calcium binding proteins.	Domain
B [auth I], C [auth J], K, L, M [auth N], B [auth I], C [auth J], K, L, M [auth N], N [auth M], O, P	PF00036	EF hand (EF-hand_1)	EF hand	The EF-hands can be divided into two classes: signalling proteins and buffering/transport proteins. The first group is the largest and includes the most well-known members of the family such as calmodulin, troponin C and S100B. These proteins typica ...	The EF-hands can be divided into two classes: signalling proteins and buffering/transport proteins. The first group is the largest and includes the most well-known members of the family such as calmodulin, troponin C and S100B. These proteins typically undergo a calcium-dependent conformational change which opens a target binding site. The latter group is represented by calbindin D9k and do not undergo calcium dependent conformational changes.	Domain
G [auth D], H [auth A], I [auth B], J [auth C]	PF00622	SPRY domain (SPRY)	SPRY domain	-	Family
G [auth D], H [auth A], I [auth B], J [auth C]	PF08454	RyR and IP3R Homology associated (RIH_assoc)	RyR and IP3R Homology associated	-	Repeat
G [auth D], H [auth A], I [auth B], J [auth C]	PF02815	MIR domain (MIR)	MIR domain	The MIR (protein mannosyltransferase, IP3R and RyR) domain is a domain that may have a ligand transferase function [1].	Domain
G [auth D], H [auth A], I [auth B], J [auth C]	PF21119	Ryanodine receptor junctional solenoid repeat (RYDR_Jsol)	Ryanodine receptor junctional solenoid repeat	This entry represents a region of the Ryanodine receptor composed of alpha helical ARM repeats [1]. This region has been termed the Junctional solenoid region (Jsol) [1].	Domain
G [auth D], H [auth A], I [auth B], J [auth C]	PF01365	RIH domain (RYDR_ITPR)	RIH domain	-	Repeat
G [auth D], H [auth A], I [auth B], J [auth C]	PF00520	Ion transport protein (Ion_trans)	Ion transport protein	-	Family
G [auth D], H [auth A], I [auth B], J [auth C]	PF02026	RyR domain (RyR)	RyR domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth E], D [auth F], E [auth G], F [auth H]	Peptidyl-prolyl cis-trans isomerase FKBP1A	isomerase activity catalytic activity, acting on a protein peptidyl-prolyl cis-trans isomerase activity catalytic activity cis-trans isomerase activity transforming growth factor beta receptor binding protein binding binding signaling receptor binding type I transforming growth factor beta receptor binding cytokine receptor binding FK506 binding amide binding organic cyclic compound binding isomerase activity catalytic activity, acting on a protein peptidyl-prolyl cis-trans isomerase activity catalytic activity cis-trans isomerase activity transforming growth factor beta receptor binding protein binding binding signaling receptor binding type I transforming growth factor beta receptor binding cytokine receptor binding FK506 binding amide binding organic cyclic compound binding macrolide binding Hsp70 protein binding protein-folding chaperone binding heat shock protein binding transmembrane transporter binding enzyme binding identical protein binding	cellular response to stimulus response to organic substance regulation of biological process regulation of cellular process response to stimulus cell surface receptor signaling pathway signaling biological regulation response to cytokine cytokine-mediated signaling pathway cell communication cellular response to chemical stimulus response to chemical cellular response to cytokine stimulus cellular response to stimulus response to organic substance regulation of biological process regulation of cellular process response to stimulus cell surface receptor signaling pathway signaling biological regulation response to cytokine cytokine-mediated signaling pathway cell communication cellular response to chemical stimulus response to chemical cellular response to cytokine stimulus cellular process cellular response to organic substance signal transduction regulation of calcium ion transmembrane transporter activity regulation of calcium ion transport regulation of localization intracellular calcium ion homeostasis negative regulation of biological process calcium ion transport localization monoatomic cation homeostasis monoatomic cation transport intracellular monoatomic ion homeostasis regulation of release of sequestered calcium ion into cytosol regulation of monoatomic ion transport inorganic ion transmembrane transport establishment of localization regulation of cation channel activity inorganic cation transmembrane transport maintenance of location transmembrane transport release of sequestered calcium ion into cytosol regulation of molecular function regulation of transmembrane transport chemical homeostasis cellular localization inorganic ion homeostasis transport homeostatic process monoatomic ion transmembrane transport regulation of transmembrane transporter activity calcium ion homeostasis regulation of monoatomic ion transmembrane transport negative regulation of sequestering of calcium ion metal ion transport maintenance of location in cell regulation of transporter activity regulation of calcium ion transmembrane transport monoatomic cation transmembrane transport intracellular monoatomic cation homeostasis monoatomic ion homeostasis negative regulation of cellular process monoatomic ion transport intracellular chemical homeostasis regulation of metal ion transport regulation of sequestering of calcium ion regulation of monoatomic ion transmembrane transporter activity calcium ion transmembrane import into cytosol regulation of transport sequestering of calcium ion regulation of ryanodine-sensitive calcium-release channel activity cellular homeostasis regulation of monoatomic cation transmembrane transport calcium ion transmembrane transport response to organonitrogen compound response to nitrogen compound response to purine-containing compound response to organic cyclic compound response to caffeine response to alkaloid developmental process heart development multicellular organismal process cardiac chamber morphogenesis heart trabecula formation animal organ development heart morphogenesis circulatory system development anatomical structure morphogenesis multicellular organism development anatomical structure development anatomical structure formation involved in morphogenesis cardiac chamber development animal organ morphogenesis heart trabecula morphogenesis trabecula formation trabecula morphogenesis system development cell population proliferation cell activation lymphocyte activation leukocyte proliferation leukocyte activation immune system process mononuclear cell proliferation T cell activation lymphocyte proliferation T cell proliferation system process muscle contraction muscle system process ventricular cardiac muscle tissue morphogenesis striated muscle tissue development muscle structure development ventricular cardiac muscle tissue development muscle tissue development muscle organ development cardiac muscle tissue development tissue development muscle tissue morphogenesis tissue morphogenesis cardiac ventricle morphogenesis cardiac muscle tissue morphogenesis cardiac ventricle development muscle organ morphogenesis	membrane cellular anatomical entity membrane-bounded organelle intracellular anatomical structure organelle subcompartment intracellular membrane-bounded organelle endomembrane system sarcoplasm endoplasmic reticulum subcompartment intracellular organelle bounding membrane of organelle organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum membrane cellular anatomical entity membrane-bounded organelle intracellular anatomical structure organelle subcompartment intracellular membrane-bounded organelle endomembrane system sarcoplasm endoplasmic reticulum subcompartment intracellular organelle bounding membrane of organelle organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum sarcoplasmic reticulum sarcoplasmic reticulum membrane cytoplasm organelle membrane endoplasmic reticulum membrane cytoplasmic side of membrane side of membrane cytosol synapse cell junction protein-containing complex membrane protein complex ryanodine receptor complex transporter complex cell periphery endoplasmic reticulum protein-containing complex plasma membrane protein complex voltage-gated calcium channel complex plasma membrane cation channel complex transmembrane transporter complex calcium channel complex monoatomic ion channel complex axon neuron projection axon terminus plasma membrane bounded cell projection presynapse cell projection distal axon neuron projection terminus
B [auth I], C [auth J], K, L, M [auth N], B [auth I], C [auth J], K, L, M [auth N], N [auth M], O, P	Protein S100A1	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding protein binding S100 protein binding identical protein binding protein homodimerization activity protein dimerization activity RAGE receptor binding signaling receptor binding calcium-dependent protein binding cation binding ion binding binding calcium ion binding metal ion binding small molecule binding protein binding S100 protein binding identical protein binding protein homodimerization activity protein dimerization activity RAGE receptor binding signaling receptor binding calcium-dependent protein binding ATPase binding enzyme binding	regulation of biological process cell population proliferation regulation of cellular process positive regulation of cell population proliferation regulation of cell population proliferation biological regulation positive regulation of biological process cellular process positive regulation of cellular process heart process multicellular organismal process system process regulation of heart contraction regulation of system process regulation of biological process cell population proliferation regulation of cellular process positive regulation of cell population proliferation regulation of cell population proliferation biological regulation positive regulation of biological process cellular process positive regulation of cellular process heart process multicellular organismal process system process regulation of heart contraction regulation of system process circulatory system process regulation of blood circulation regulation of multicellular organismal process heart contraction blood circulation cellular response to stimulus positive regulation of cell communication positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction response to stimulus signaling regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette signal transduction regulation of signaling positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of response to stimulus regulation of cell communication regulation of canonical NF-kappaB signal transduction positive regulation of signaling regulation of sprouting angiogenesis regulation of developmental process angiogenesis regulation of vasculature development positive regulation of developmental process multicellular organism development tube morphogenesis anatomical structure development positive regulation of sprouting angiogenesis regulation of anatomical structure morphogenesis blood vessel development system development developmental process regulation of multicellular organismal development blood vessel morphogenesis tube development positive regulation of angiogenesis sprouting angiogenesis vasculature development circulatory system development anatomical structure morphogenesis positive regulation of vasculature development regulation of angiogenesis anatomical structure formation involved in morphogenesis positive regulation of multicellular organismal process	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle Golgi apparatus endomembrane system cytosol perinuclear region of cytoplasm sarcoplasm endoplasmic reticulum membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle Golgi apparatus endomembrane system cytosol perinuclear region of cytoplasm sarcoplasm endoplasmic reticulum sarcoplasmic reticulum extracellular region extracellular space nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
G [auth D], H [auth A], I [auth B], J [auth C]	Ryanodine receptor 1	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding calcium-induced calcium release activity calcium channel activity monoatomic cation transmembrane transporter activity intracellularly ligand-gated monoatomic ion channel activity gated channel activity monoatomic ion channel activity ryanodine-sensitive calcium-release channel activity intracellularly gated calcium channel activity ligand-gated channel activity ligand-gated monoatomic ion channel activity monoatomic cation channel activity passive transmembrane transporter activity calcium ion transmembrane transporter activity inorganic molecular entity transmembrane transporter activity channel activity ligand-gated calcium channel activity inorganic cation transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity metal ion transmembrane transporter activity ligand-gated monoatomic cation channel activity transmembrane transporter activity protein binding calmodulin binding cation binding calcium ion binding metal ion binding voltage-gated calcium channel activity voltage-gated channel activity voltage-gated monoatomic ion channel activity voltage-gated monoatomic cation channel activity enzyme binding protease binding	multicellular organismal process system process muscle contraction muscle system process striated muscle contraction response to organic substance response to stimulus response to chemical response to organonitrogen compound response to nitrogen compound response to purine-containing compound response to organic cyclic compound response to caffeine response to alkaloid multicellular organismal process system process muscle contraction muscle system process striated muscle contraction response to organic substance response to stimulus response to chemical response to organonitrogen compound response to nitrogen compound response to purine-containing compound response to organic cyclic compound response to caffeine response to alkaloid cellular response to stimulus cellular response to nitrogen compound response to endogenous stimulus cellular response to caffeine cellular response to organic cyclic compound cellular response to endogenous stimulus cellular response to chemical stimulus cellular response to organonitrogen compound cellular process cellular response to organic substance cellular response to alkaloid cellular response to purine-containing compound inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis regulation of cytosolic calcium ion concentration cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis cellular response to inorganic substance cellular response to metal ion response to inorganic substance response to metal ion cellular response to calcium ion response to calcium ion negative regulation of transforming growth factor beta receptor signaling pathway regulation of cellular process cell surface receptor protein serine/threonine kinase signaling pathway cellular response to growth factor stimulus negative regulation of signaling signaling cellular response to transforming growth factor beta stimulus regulation of transmembrane receptor protein serine/threonine kinase signaling pathway negative regulation of biological process regulation of signal transduction negative regulation of cell communication cell communication regulation of transforming growth factor beta receptor signaling pathway negative regulation of cellular process signal transduction enzyme-linked receptor protein signaling pathway regulation of signaling regulation of biological process cell surface receptor signaling pathway negative regulation of response to stimulus regulation of cellular response to transforming growth factor beta stimulus regulation of cellular response to growth factor stimulus biological regulation negative regulation of signal transduction response to transforming growth factor beta regulation of response to stimulus transforming growth factor beta receptor signaling pathway regulation of cell communication response to growth factor transforming growth factor beta receptor superfamily signaling pathway negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway cellular response to ATP response to organophosphorus response to oxygen-containing compound response to ATP cellular response to oxygen-containing compound developmental process myotube cell development skeletal muscle fiber development cellular developmental process skeletal muscle tissue development animal organ development cell development tissue development muscle cell differentiation myotube differentiation muscle structure development skeletal muscle organ development muscle cell development cell differentiation anatomical structure development muscle tissue development muscle organ development striated muscle cell differentiation regulation of muscle contraction regulation of system process regulation of multicellular organismal process regulation of muscle system process skin development protein-containing complex organization protein homotetramerization cellular component organization cellular component biogenesis cellular component assembly protein complex oligomerization protein tetramerization protein-containing complex assembly protein homooligomerization cellular component organization or biogenesis localization transport sarcoplasmic reticulum calcium ion transport monoatomic ion transport monoatomic cation transport establishment of localization calcium ion transport metal ion transport bone maturation developmental maturation multicellular organism development skeletal system development ossification anatomical structure maturation ossification involved in bone maturation animal organ maturation bone development system development regulation of localization cellular localization monoatomic ion transmembrane transport negative regulation of sequestering of calcium ion maintenance of location in cell monoatomic cation transmembrane transport regulation of sequestering of calcium ion calcium ion transmembrane import into cytosol sequestering of calcium ion inorganic ion transmembrane transport inorganic cation transmembrane transport maintenance of location transmembrane transport release of sequestered calcium ion into cytosol calcium ion transmembrane transport response to osmotic stress response to stress regulation of response to stress response to abiotic stimulus regulation of response to osmotic stress release of sequestered calcium ion into cytosol by sarcoplasmic reticulum release of sequestered calcium ion into cytosol by endoplasmic reticulum heart development heart morphogenesis circulatory system development anatomical structure morphogenesis outflow tract morphogenesis animal organ morphogenesis	cell periphery sarcolemma plasma membrane membrane T-tubule cellular anatomical entity membrane-bounded organelle intracellular anatomical structure organelle subcompartment intracellular membrane-bounded organelle endomembrane system sarcoplasm intracellular organelle endoplasmic reticulum subcompartment cell periphery sarcolemma plasma membrane membrane T-tubule cellular anatomical entity membrane-bounded organelle intracellular anatomical structure organelle subcompartment intracellular membrane-bounded organelle endomembrane system sarcoplasm intracellular organelle endoplasmic reticulum subcompartment terminal cisterna organelle endoplasmic reticulum sarcoplasmic reticulum cytoplasm Z disc sarcomere I band intracellular non-membrane-bounded organelle contractile muscle fiber supramolecular fiber myofibril supramolecular polymer supramolecular complex non-membrane-bounded organelle smooth endoplasmic reticulum protein-containing complex transmembrane transporter complex membrane protein complex cation channel complex transporter complex calcium channel complex monoatomic ion channel complex junctional membrane complex extrinsic component of plasma membrane cytoplasmic side of plasma membrane cytoplasmic side of membrane extrinsic component of membrane extrinsic component of cytoplasmic side of plasma membrane side of membrane perinuclear region of cytoplasm organelle membrane vesicle bounding membrane of organelle nuclear outer membrane-endoplasmic reticulum membrane network sarcoplasmic reticulum membrane endoplasmic reticulum membrane ryanodine receptor complex endoplasmic reticulum protein-containing complex plasma membrane protein complex voltage-gated calcium channel complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth E], D [auth F], E [auth G], F [auth H]	IPR046357	Peptidyl-prolyl cis-trans isomerase domain superfamily	Homologous Superfamily
A [auth E], D [auth F], E [auth G], F [auth H]	IPR001179	FKBP-type peptidyl-prolyl cis-trans isomerase domain	Domain
B [auth I], C [auth J], K, L, M [auth N], B [auth I], C [auth J], K, L, M [auth N], N [auth M], O, P	IPR018247	EF-Hand 1, calcium-binding site	Binding Site
B [auth I], C [auth J], K, L, M [auth N], B [auth I], C [auth J], K, L, M [auth N], N [auth M], O, P	IPR013787	S100/CaBP-9k-type, calcium binding, subdomain	Domain
B [auth I], C [auth J], K, L, M [auth N], B [auth I], C [auth J], K, L, M [auth N], N [auth M], O, P	IPR001751	S100/Calcium binding protein 7/8-like, conserved site	Conserved Site
B [auth I], C [auth J], K, L, M [auth N], B [auth I], C [auth J], K, L, M [auth N], N [auth M], O, P	IPR028486	Protein S100-A1	Family
B [auth I], C [auth J], K, L, M [auth N], B [auth I], C [auth J], K, L, M [auth N], N [auth M], O, P	IPR002048	EF-hand domain	Domain
B [auth I], C [auth J], K, L, M [auth N], B [auth I], C [auth J], K, L, M [auth N], N [auth M], O, P	IPR011992	EF-hand domain pair	Homologous Superfamily
G [auth D], H [auth A], I [auth B], J [auth C]	IPR036300	Mir domain superfamily	Homologous Superfamily
G [auth D], H [auth A], I [auth B], J [auth C]	IPR000699	RIH domain	Domain
G [auth D], H [auth A], I [auth B], J [auth C]	IPR013662	RyR/IP3R Homology associated domain	Domain
G [auth D], H [auth A], I [auth B], J [auth C]	IPR016093	MIR motif	Domain
G [auth D], H [auth A], I [auth B], J [auth C]	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
G [auth D], H [auth A], I [auth B], J [auth C]	IPR003877	SPRY domain	Domain
G [auth D], H [auth A], I [auth B], J [auth C]	IPR001870	B30.2/SPRY domain	Domain
G [auth D], H [auth A], I [auth B], J [auth C]	IPR009460	Ryanodine Receptor TM 4-6	Domain
G [auth D], H [auth A], I [auth B], J [auth C]	IPR015925	Ryanodine/Inositol 1,4,5-trisphosphate receptor	Family
G [auth D], H [auth A], I [auth B], J [auth C]	IPR048581	Ryanodine receptor, junctional solenoid domain	Domain
G [auth D], H [auth A], I [auth B], J [auth C]	IPR035910	RyR/IP3 receptor binding core, RIH domain superfamily	Homologous Superfamily
G [auth D], H [auth A], I [auth B], J [auth C]	IPR003032	Ryanodine receptor Ryr	Domain
G [auth D], H [auth A], I [auth B], J [auth C]	IPR035761	Ryanodine receptor, SPRY domain 1	Domain
G [auth D], H [auth A], I [auth B], J [auth C]	IPR014821	Inositol 1,4,5-trisphosphate/ryanodine receptor	Domain
G [auth D], H [auth A], I [auth B], J [auth C]	IPR035764	Ryanodine receptor, SPRY domain 2	Domain
G [auth D], H [auth A], I [auth B], J [auth C]	IPR013333	Ryanodine receptor	Family
G [auth D], H [auth A], I [auth B], J [auth C]	IPR043136	B30.2/SPRY domain superfamily	Homologous Superfamily
G [auth D], H [auth A], I [auth B], J [auth C]	IPR011992	EF-hand domain pair	Homologous Superfamily
G [auth D], H [auth A], I [auth B], J [auth C]	IPR005821	Ion transport domain	Domain
G [auth D], H [auth A], I [auth B], J [auth C]	IPR035762	Ryanodine receptor, SPRY domain 3	Domain