Annotations: 8V38

Structure of the human systemic RNAi defective transmembrane protein 1 (hSIDT1)

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: mpstruc

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF13965	dsRNA-gated channel SID-1 integral membrane domain (SID-1_RNA_chan)	dsRNA-gated channel SID-1 integral membrane domain	This is entry represents the integral membrane domain of a family of proteins that are transmembrane dsRNA-gated channels. They passively transport dsRNA into cells and do not act as ATP-dependent pumps [1]. They are required for systemic RNA interfe ...	This is entry represents the integral membrane domain of a family of proteins that are transmembrane dsRNA-gated channels. They passively transport dsRNA into cells and do not act as ATP-dependent pumps [1]. They are required for systemic RNA interference [2,3]. This family of proteins belong to the CREST superfamily [4], which are distantly related to GPCRs.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	SID1 transmembrane family member 1,RNA-directed RNA polymerase L	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding RNA methyltransferase activity catalytic activity, acting on RNA transferase activity, transferring one-carbon groups catalytic activity, acting on a nucleic acid transferase activity S-adenosylmethionine-dependent methyltransferase activity mRNA 5'-cap (guanine-N7-)-methyltransferase activity N-methyltransferase activity methyltransferase activity catalytic activity mRNA methyltransferase activity RNA-directed RNA polymerase activity 5'-3' RNA polymerase activity RNA polymerase activity nucleotidyltransferase activity transferase activity, transferring phosphorus-containing groups hydrolase activity RNA binding nucleic acid binding macromolecule transmembrane transporter activity nucleic acid transmembrane transporter activity nucleobase-containing compound transmembrane transporter activity RNA transmembrane transporter activity transporter activity transmembrane transporter activity sterol binding alcohol binding steroid binding lipid binding cholesterol binding double-stranded RNA binding	bioluminescence metabolic process cellular process S-adenosylmethionine metabolic process sulfur compound metabolic process generation of precursor metabolites and energy localization RNA transport nitrogen compound transport establishment of RNA localization transport macromolecule localization nucleic acid transport RNA localization bioluminescence metabolic process cellular process S-adenosylmethionine metabolic process sulfur compound metabolic process generation of precursor metabolites and energy localization RNA transport nitrogen compound transport establishment of RNA localization transport macromolecule localization nucleic acid transport RNA localization establishment of localization nucleobase-containing compound transport	host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part cell periphery plasma membrane membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part cell periphery plasma membrane membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle lytic vacuole vacuole cytoplasm intracellular membrane-bounded organelle lysosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR014023	Mononegavirales RNA-directed RNA polymerase catalytic domain	Domain
A, B	IPR025786	Mononegavirus L protein 2-O-ribose methyltransferase	Domain
A, B	IPR026890	Mononegavirales mRNA-capping domain V	Domain
A, B	IPR000786	Green fluorescent protein, GFP	Family
A, B	IPR011584	Green fluorescent protein-related	Family
A, B	IPR039736	RNA-directed RNA polymerase L, C-terminal	Domain
A, B	IPR009017	Green fluorescent protein	Homologous Superfamily
A, B	IPR039530	RNA-directed RNA polymerase L methyltransferase domain, rhabdovirus	Domain
A, B	IPR025958	SID1 transmembrane family	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	: Q9NXL6	atypical teratoid rhabdoid tumor endometriosis large cell medulloblastoma malignant glioma pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma subependymal giant cell astrocytoma cutaneous lupus erythematosus glioblastoma lung cancer medulloblastoma pancreatic intraductal papillary-mucinous neoplasm primitive neuroectodermal tumor transitional cell carcinoma ductal breast carcinoma in situ atypical teratoid rhabdoid tumor endometriosis large cell medulloblastoma malignant glioma pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma subependymal giant cell astrocytoma cutaneous lupus erythematosus glioblastoma lung cancer medulloblastoma pancreatic intraductal papillary-mucinous neoplasm primitive neuroectodermal tumor transitional cell carcinoma ductal breast carcinoma in situ invasive ductal breast carcinoma lung carcinoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia prostate carcinoma

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Systemic RNA Interference Defective Proteins	SIDT1 (SID-1 transmembrane family member 1)