8UUA | pdb_00008uua

Cryo-EM structure of the Listeria innocua 50S ribosomal subunit in complex with HflXr (structure III)


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
S [auth V]PF13167GTP-binding GTPase N-terminal (GTP-bdg_N)GTP-binding GTPase N-terminal- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth L]Large ribosomal subunit protein uL13
H [auth G]Large ribosomal subunit protein uL6
G [auth F]Large ribosomal subunit protein uL5
F [auth E]Large ribosomal subunit protein uL4
E [auth D]Large ribosomal subunit protein uL3
D [auth C]Large ribosomal subunit protein uL2
DA [auth 8]Large ribosomal subunit protein bL36
C [auth B]5S Ribosomal RNA---
CA [auth 7]Large ribosomal subunit protein bL35
BA [auth 6]Large ribosomal subunit protein bL34
AA [auth 5]Large ribosomal subunit protein bL33
Z [auth 4]Large ribosomal subunit protein bL32
Y [auth 3]Large ribosomal subunit protein bL31B
X [auth 2]Large ribosomal subunit protein uL30
W [auth 1]Large ribosomal subunit protein uL29
V [auth Z]Large ribosomal subunit protein bL28
U [auth Y]Large ribosomal subunit protein bL27
T [auth W]Large ribosomal subunit protein uL24
B [auth A]23S Ribosomal RNA---
S [auth V]Large ribosomal subunit protein uL23
R [auth U]Large ribosomal subunit protein uL22
Q [auth T]Large ribosomal subunit protein bL21
P [auth S]Large ribosomal subunit protein bL20
O [auth R]Large ribosomal subunit protein bL19
N [auth Q]Large ribosomal subunit protein uL18
M [auth P]Large ribosomal subunit protein bL17
L [auth O]Large ribosomal subunit protein uL16
K [auth N]Large ribosomal subunit protein uL15
J [auth M]Large ribosomal subunit protein uL14
A [auth v]GTPase HflX -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth L]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
I [auth L]IPR005822Large ribosomal subunit protein uL13Family
I [auth L]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
I [auth L]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
H [auth G]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
H [auth G]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
H [auth G]IPR000702Large ribosomal subunit protein uL6-likeFamily
H [auth G]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
H [auth G]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
G [auth F]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
G [auth F]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
G [auth F]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
G [auth F]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
G [auth F]IPR002132Large ribosomal subunit protein uL5Family
G [auth F]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
F [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
F [auth E]IPR002136Large ribosomal subunit protein uL4Family
F [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
E [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
E [auth D]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
E [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
E [auth D]IPR000597Large ribosomal subunit protein uL3Family
D [auth C]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
D [auth C]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
D [auth C]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
D [auth C]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
D [auth C]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
D [auth C]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
D [auth C]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
D [auth C]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
D [auth C]IPR002171Large ribosomal subunit protein uL2Family
DA [auth 8]IPR000473Large ribosomal subunit protein bL36Family
DA [auth 8]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
CA [auth 7]IPR021137Large ribosomal subunit protein bL35-likeFamily
CA [auth 7]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
CA [auth 7]IPR001706Large ribosomal subunit protein bL35Family
CA [auth 7]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
BA [auth 6]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
BA [auth 6]IPR000271Large ribosomal subunit protein bL34Family
AA [auth 5]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
AA [auth 5]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
AA [auth 5]IPR001705Large ribosomal subunit protein bL33Family
AA [auth 5]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
Z [auth 4]IPR002677Large ribosomal subunit protein bL32Family
Z [auth 4]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Z [auth 4]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
Y [auth 3]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
Y [auth 3]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
Y [auth 3]IPR027493Large ribosomal subunit protein bL31 type BFamily
Y [auth 3]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
X [auth 2]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
X [auth 2]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
X [auth 2]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
X [auth 2]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
W [auth 1]IPR050063Universal ribosomal protein uL29Family
W [auth 1]IPR001854Large ribosomal subunit protein uL29Family
W [auth 1]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
W [auth 1]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
V [auth Z]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
V [auth Z]IPR050096Bacterial ribosomal protein bL28Family
V [auth Z]IPR001383Large ribosomal subunit protein bL28, bacteriaFamily
V [auth Z]IPR026569Large ribosomal subunit protein bL28Family
V [auth Z]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
U [auth Y]IPR001684Large ribosomal subunit protein bL27Family
U [auth Y]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
T [auth W]IPR057264Large ribosomal subunit protein uL24, C-terminal domainDomain
T [auth W]IPR003256Large ribosomal subunit protein uL24Family
T [auth W]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
T [auth W]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
T [auth W]IPR005824KOWDomain
T [auth W]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
T [auth W]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
S [auth V]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
S [auth V]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
S [auth V]IPR013025Large ribosomal subunit protein uL23-likeFamily
R [auth U]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
R [auth U]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
R [auth U]IPR001063Large ribosomal subunit protein uL22Family
R [auth U]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
R [auth U]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
Q [auth T]IPR028909Large ribosomal subunit protein bL21-likeFamily
Q [auth T]IPR001787Large ribosomal subunit protein bL21Family
Q [auth T]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
Q [auth T]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
P [auth S]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
P [auth S]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
P [auth S]IPR005813Large ribosomal subunit protein bL20Family
O [auth R]IPR001857Large ribosomal subunit protein bL19Family
O [auth R]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
O [auth R]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
O [auth R]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
N [auth Q]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
N [auth Q]IPR057268Large ribosomal subunit protein uL18Family
N [auth Q]IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
M [auth P]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
M [auth P]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
M [auth P]IPR000456Large ribosomal subunit protein bL17Family
L [auth O]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
L [auth O]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
L [auth O]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
L [auth O]IPR016180Large ribosomal subunit protein uL16 domainDomain
L [auth O]IPR047873Large ribosomal subunit protein uL16Family
K [auth N]IPR021131Large ribosomal subunit protein uL15/eL18Domain
K [auth N]IPR030878Large ribosomal subunit protein uL15Family
K [auth N]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
K [auth N]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
K [auth N]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
J [auth M]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
J [auth M]IPR000218Large ribosomal subunit protein uL14Family
J [auth M]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
J [auth M]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
A [auth v]IPR032305GTP-binding protein, middle domainDomain
A [auth v]IPR016496GTPase HflXFamily
A [auth v]IPR030394HflX-type guanine nucleotide-binding (G) domainDomain
A [auth v]IPR025121GTPase HflX, N-terminalDomain
A [auth v]IPR042108GTPase HflX, N-terminal domain superfamilyHomologous Superfamily
A [auth v]IPR006073GTP binding domainDomain
A [auth v]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily