Annotations: 8S5E

Cryo-EM structure of Arf1-decorated membrane tubules

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
G	SCOP2B Superfamily	Ras-like P-loop GTPases	8089854	3002022	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Ras-like P-loop GTPases	8089854	3002022	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Ras-like P-loop GTPases	8089854	3002022	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ras-like P-loop GTPases	8089854	3002022	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ras-like P-loop GTPases	8089854	3002022	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ras-like P-loop GTPases	8089854	3002022	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Ras-like P-loop GTPases	8089854	3002022	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G	Rap1-DNA-bind	e8s5eG1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rap1-DNA-bind	ECOD (v295)
F	Rap1-DNA-bind	e8s5eF1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rap1-DNA-bind	ECOD (v295)
E	Rap1-DNA-bind	e8s5eE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rap1-DNA-bind	ECOD (v295)
D	Rap1-DNA-bind	e8s5eD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rap1-DNA-bind	ECOD (v295)
C	Rap1-DNA-bind	e8s5eC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rap1-DNA-bind	ECOD (v295)
B	Rap1-DNA-bind	e8s5eB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rap1-DNA-bind	ECOD (v295)
A	Rap1-DNA-bind	e8s5eA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rap1-DNA-bind	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G	ADP-ribosylation factor 1	pyrophosphatase activity GTPase activity G protein activity ribonucleoside triphosphate phosphatase activity molecular function regulator activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding pyrophosphatase activity GTPase activity G protein activity ribonucleoside triphosphate phosphatase activity molecular function regulator activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding	positive regulation of organelle organization regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization regulation of developmental process positive regulation of biological process cellular component organization positive regulation of developmental process anatomical structure development regulation of mitochondrial fusion cellular component organization or biogenesis mitochondrial fusion positive regulation of cellular process regulation of anatomical structure morphogenesis positive regulation of organelle organization regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization regulation of developmental process positive regulation of biological process cellular component organization positive regulation of developmental process anatomical structure development regulation of mitochondrial fusion cellular component organization or biogenesis mitochondrial fusion positive regulation of cellular process regulation of anatomical structure morphogenesis positive regulation of mitochondrial fusion mitochondrion organization developmental process regulation of biological process biological regulation regulation of organelle organization organelle fusion anatomical structure morphogenesis organelle organization regulation of mitochondrion organization cellular process cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization intracellular protein localization intracellular protein transport catabolic process macroautophagy autophagy metabolic process process utilizing autophagic mechanism Golgi to plasma membrane transport post-Golgi vesicle-mediated transport localization within membrane vesicle-mediated transport vesicle-mediated transport to the plasma membrane Golgi vesicle transport fatty acid metabolic process oxoacid metabolic process ketone metabolic process regulation of lipid metabolic process carboxylic acid metabolic process primary metabolic process regulation of ketone metabolic process regulation of primary metabolic process regulation of small molecule metabolic process regulation of fatty acid metabolic process small molecule metabolic process monocarboxylic acid metabolic process regulation of metabolic process lipid metabolic process organelle fission mitochondrial fission regulation of mitochondrial fission positive regulation of mitochondrial fission protein localization to Golgi membrane protein localization to Golgi apparatus protein localization to organelle protein localization to membrane endoplasmic reticulum to Golgi vesicle-mediated transport intercellular transport regulation of Golgi organization Golgi organization endomembrane system organization	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system cytosol cell periphery plasma membrane membrane organelle membrane contact site

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G	IPR005225	Small GTP-binding domain	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR045872	ADP-ribosylation factor 1-5	Family
A, B, C, D, E A, B, C, D, E, F, G	IPR024156	Small GTPase superfamily, ARF type	Family
A, B, C, D, E A, B, C, D, E, F, G	IPR006689	Small GTPase superfamily, ARF/SAR type	Family
A, B, C, D, E A, B, C, D, E, F, G	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8S5E | pdb_00008s5e

Cryo-EM structure of Arf1-decorated membrane tubules

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage