Annotations: 8S24

Structure of the E3 ubiquitin ligase RNF213, determined by cryoEM

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00097	Zinc finger, C3HC4 type (RING finger) (zf-C3HC4)	Zinc finger, C3HC4 type (RING finger)	The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid [1]. Many protein ...	The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid [1]. Many proteins containing a RING finger play a key role in the ubiquitination pathway [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	E3 ubiquitin-protein ligase RNF213	aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides ATP-dependent activity cation binding ion binding binding metal ion binding small molecule binding	regulation of biological process regulation of cellular process regulation of lipid metabolic process biological regulation primary metabolic process metabolic process cellular process regulation of metabolic process lipid metabolic process regulation of primary metabolic process developmental process multicellular organismal process blood vessel morphogenesis tube development regulation of biological process regulation of cellular process regulation of lipid metabolic process biological regulation primary metabolic process metabolic process cellular process regulation of metabolic process lipid metabolic process regulation of primary metabolic process developmental process multicellular organismal process blood vessel morphogenesis tube development angiogenesis vasculature development circulatory system development anatomical structure morphogenesis multicellular organism development tube morphogenesis anatomical structure formation involved in morphogenesis anatomical structure development animal gross anatomical part developmental process blood vessel development system development lipid modification by small protein conjugation lipid ubiquitination lipid modification protein autoubiquitination protein ubiquitination macromolecule modification protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal sprouting angiogenesis defense response to bacterium biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response response to bacterium response to stress response to external stimulus response to external biotic stimulus response to biotic stimulus catabolic process macroautophagy autophagy xenophagy defense response to other organism process utilizing autophagic mechanism protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process protein polyubiquitination protein K63-linked ubiquitination organelle assembly lipid storage membraneless organelle assembly lipid droplet formation cellular component organization cellular component biogenesis organelle organization cellular component assembly lipid droplet organization nutrient storage cellular component organization or biogenesis cellular response to stimulus signaling negative regulation of signaling negative regulation of biological process regulation of signal transduction negative regulation of cell communication cell communication negative regulation of Wnt signaling pathway negative regulation of cellular process non-canonical Wnt signaling pathway signal transduction Wnt signaling pathway regulation of signaling regulation of Wnt signaling pathway cell surface receptor signaling pathway negative regulation of response to stimulus negative regulation of signal transduction regulation of non-canonical Wnt signaling pathway negative regulation of non-canonical Wnt signaling pathway regulation of response to stimulus regulation of cell communication	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol lipid droplet intracellular organelle organelle membraneless organelle intracellular membraneless organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR063375	RNF213, AAA domain 5	Domain
A	IPR063558	RNF213, AAA domain 3	Domain
A	IPR063148	RNF213, AAA domain 1	Domain
A	IPR063190	RNF213, AAA domain 2	Domain
A	IPR003593	AAA+ ATPase domain	Domain
A	IPR063557	RNF213, stalk domain	Domain
A	IPR063172	RNF213, AAA domain 6	Domain
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR018957	Zinc finger, C3HC4 RING-type	Domain
A	IPR063556	RNF213, AAA domain 4	Domain
A	IPR031248	E3 ubiquitin-protein ligase RNF213	Family
A	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
A	IPR046439	Zinc finger, RZ-type	Domain
A	IPR001841	Zinc finger, RING-type	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	: Q63HN8	Moyamoya disease Moyamoya disease 2 medulloblastoma moyamoya disease 1 myopathy ovarian cancer pancreatic intraductal papillary-mucinous neoplasm acute myeloid leukemia pilocytic astrocytoma atypical teratoid rhabdoid tumor psoriasis cancer subependymal giant cell astrocytoma cystic fibrosis interstitial cystitis Moyamoya disease Moyamoya disease 2 medulloblastoma moyamoya disease 1 myopathy ovarian cancer pancreatic intraductal papillary-mucinous neoplasm acute myeloid leukemia pilocytic astrocytoma atypical teratoid rhabdoid tumor psoriasis cancer subependymal giant cell astrocytoma cystic fibrosis interstitial cystitis lung adenocarcinoma malignant glioma migraine disorder oligodendroglioma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia astrocytic tumor pituitary cancer breast cancer sinusitis cerebrovascular disorder tuberculosis gastric carcinoma invasive ductal breast carcinoma lung carcinoma malignant pancreatic neoplasm multiple sclerosis osteosarcoma pancreatic intraductal papillary-mucinous carcinoma Pick disease atopic eczema primitive neuroectodermal tumor breast carcinoma Sjogren syndrome Crohn disease ulcerative colitis glioblastoma juvenile dermatomyositis malignant ependymoma