8RDX

PGGtase I in complex with probe BAY-6092

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Protein prenylyltransferase	8038634	3001312	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Protein prenylyltransferase	8038634	3001312	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Protein prenylyltransferase	8038634	3001312	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Protein prenylyltransferase	8038634	3001312	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Protein prenylyltransferase	8038634	3001312	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Protein prenylyltransferase	8038634	3001312	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Terpenoid cyclases/Protein prenyltransferases	8084558	3001024	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Terpenoid cyclases/Protein prenyltransferases	8084558	3001024	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Terpenoid cyclases/Protein prenyltransferases	8084558	3001024	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Terpenoid cyclases/Protein prenyltransferases	8084558	3001024	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Terpenoid cyclases/Protein prenyltransferases	8084558	3001024	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Terpenoid cyclases/Protein prenyltransferases	8084558	3001024	SCOP2B (2022-06-29)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C, E, G, I A, C, E, G, I, K	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha	catalytic activity, acting on a protein protein geranylgeranyltransferase activity protein prenyltransferase activity prenyltransferase activity transferase activity catalytic activity transferase activity, transferring alkyl or aryl (other than methyl) groups cytoskeletal protein binding protein binding binding tubulin binding alpha-tubulin binding microtubule binding Rab geranylgeranyltransferase activity catalytic activity, acting on a protein protein geranylgeranyltransferase activity protein prenyltransferase activity prenyltransferase activity transferase activity catalytic activity transferase activity, transferring alkyl or aryl (other than methyl) groups cytoskeletal protein binding protein binding binding tubulin binding alpha-tubulin binding microtubule binding Rab geranylgeranyltransferase activity molecular adaptor activity protein farnesyltransferase activity protein tyrosine kinase binding kinase binding signaling receptor binding receptor tyrosine kinase binding enzyme binding protein kinase binding CAAX-protein geranylgeranyltransferase activity	regulation of biological process regulation of cellular process biological regulation positive regulation of biological process cellular process cell cycle regulation of cell cycle positive regulation of cell cycle positive regulation of cellular process cellular response to stimulus positive regulation of cell communication small GTPase-mediated signal transduction positive regulation of signal transduction response to stimulus regulation of biological process regulation of cellular process biological regulation positive regulation of biological process cellular process cell cycle regulation of cell cycle positive regulation of cell cycle positive regulation of cellular process cellular response to stimulus positive regulation of cell communication small GTPase-mediated signal transduction positive regulation of signal transduction response to stimulus signaling regulation of small GTPase mediated signal transduction regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette signal transduction regulation of signaling Rac protein signal transduction positive regulation of intracellular signal transduction regulation of Rac protein signal transduction positive regulation of Rac protein signal transduction regulation of response to stimulus regulation of cell communication positive regulation of small GTPase mediated signal transduction positive regulation of signaling response to chemical response to inorganic substance protein localization regulation of localization cellular localization regulation of protein localization cellular component organization localization neuromuscular junction development receptor clustering cellular macromolecule localization synapse organization cellular component organization or biogenesis regulation of skeletal muscle acetylcholine-gated channel clustering regulation of receptor clustering postsynaptic membrane organization regulation of protein localization to membrane membrane organization postsynapse organization positive regulation of receptor clustering skeletal muscle acetylcholine-gated channel clustering positive regulation of protein localization to membrane localization within membrane protein localization to membrane positive regulation of skeletal muscle acetylcholine-gated channel clustering cell junction organization regulation of cellular localization macromolecule localization positive regulation of protein localization negative regulation of programmed cell death regulation of apoptotic process negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death organonitrogen compound metabolic process cellular metabolic process primary metabolic process protein farnesylation organic substance metabolic process macromolecule modification protein prenylation metabolic process protein metabolic process macromolecule metabolic process prenylation protein modification process response to organic substance response to cytokine protein geranylgeranylation cellular biosynthetic process positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process regulation of nitric-oxide synthase biosynthetic process positive regulation of biosynthetic process organic substance biosynthetic process positive regulation of macromolecule metabolic process nitric-oxide synthase biosynthetic process regulation of biosynthetic process regulation of cellular metabolic process regulation of macromolecule metabolic process macromolecule biosynthetic process regulation of cellular biosynthetic process biosynthetic process regulation of macromolecule biosynthetic process positive regulation of nitric-oxide synthase biosynthetic process regulation of metabolic process positive regulation of cellular biosynthetic process cell population proliferation positive regulation of cell population proliferation regulation of cell population proliferation negative regulation of cellular metabolic process negative regulation of nitric-oxide synthase biosynthetic process negative regulation of macromolecule metabolic process negative regulation of metabolic process negative regulation of cellular biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of protein modification process positive regulation of protein deacetylation positive regulation of protein metabolic process macromolecule deacylation positive regulation of tubulin deacetylation protein deacetylation regulation of primary metabolic process positive regulation of protein modification process regulation of protein deacetylation tubulin deacetylation regulation of protein metabolic process protein deacylation regulation of tubulin deacetylation cell surface receptor signaling pathway enzyme-linked receptor protein signaling pathway response to organic cyclic compound	protein-containing complex protein farnesyltransferase complex intracellular anatomical structure catalytic complex polyprenyl diphosphate synthase complex cytoplasm cellular anatomical entity transferase complex intracellular organelle cytoskeleton organelle intracellular non-membrane-bounded organelle microtubule associated complex microtubule cytoskeleton protein-containing complex protein farnesyltransferase complex intracellular anatomical structure catalytic complex polyprenyl diphosphate synthase complex cytoplasm cellular anatomical entity transferase complex intracellular organelle cytoskeleton organelle intracellular non-membrane-bounded organelle microtubule associated complex microtubule cytoskeleton non-membrane-bounded organelle CAAX-protein geranylgeranyltransferase complex intracellular protein-containing complex
B, D, F, H, J B, D, F, H, J, L	Geranylgeranyl transferase type-1 subunit beta	binding heterocyclic compound binding small molecule binding catalytic activity, acting on a protein protein geranylgeranyltransferase activity protein prenyltransferase activity prenyltransferase activity transferase activity catalytic activity transferase activity, transferring alkyl or aryl (other than methyl) groups cation binding transition metal ion binding zinc ion binding ion binding binding heterocyclic compound binding small molecule binding catalytic activity, acting on a protein protein geranylgeranyltransferase activity protein prenyltransferase activity prenyltransferase activity transferase activity catalytic activity transferase activity, transferring alkyl or aryl (other than methyl) groups cation binding transition metal ion binding zinc ion binding ion binding metal ion binding CAAX-protein geranylgeranyltransferase activity	regulation of biological process regulation of cellular process biological regulation positive regulation of biological process cellular process cell cycle regulation of cell cycle positive regulation of cell cycle positive regulation of cellular process cell population proliferation positive regulation of cell population proliferation regulation of cell population proliferation cellular biosynthetic process negative regulation of biological process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process cellular process cell cycle regulation of cell cycle positive regulation of cell cycle positive regulation of cellular process cell population proliferation positive regulation of cell population proliferation regulation of cell population proliferation cellular biosynthetic process negative regulation of biological process negative regulation of cellular metabolic process negative regulation of nitric-oxide synthase biosynthetic process organic substance metabolic process regulation of nitric-oxide synthase biosynthetic process negative regulation of cellular process organic substance biosynthetic process nitric-oxide synthase biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of metabolic process cellular metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process macromolecule biosynthetic process negative regulation of cellular biosynthetic process regulation of cellular biosynthetic process biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of metabolic process response to organic substance response to stimulus response to chemical response to cytokine organonitrogen compound metabolic process protein geranylgeranylation primary metabolic process macromolecule modification protein prenylation protein metabolic process prenylation protein modification process	protein-containing complex catalytic complex polyprenyl diphosphate synthase complex CAAX-protein geranylgeranyltransferase complex transferase complex intracellular protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C, E, G, I A, C, E, G, I, K	IPR002088	Protein prenyltransferase, alpha subunit	Repeat
B, D, F, H, J B, D, F, H, J, L	IPR001330	PFTB repeat	Repeat
B, D, F, H, J B, D, F, H, J, L	IPR045089	Prenyltransferase subunit beta	Family
B, D, F, H, J B, D, F, H, J, L	IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L	IPR041960	Geranylgeranyl transferase type-1 subunit beta	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.