8R2I

Cryo-EM Structure of native Photosystem II assembly intermediate from Chlamydomonas reinhardtii

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Bacterial photosystem II reaction centre L and M subunits	8094419	3000736	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Photosystem II antenna protein-like	8094573	3001674	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Photosystem II antenna protein-like	8094477	3001674	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Bacterial photosystem II reaction centre L and M subunits	8094383	3000736	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Cytochrome b559 subunits	8094631	3001602	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Cytochrome b559 subunits	8093904	3001602	SCOP2B (2022-06-29)
G [auth H]	SCOP2B Superfamily	Photosystem II 10 kDa phosphoprotein PsbH	8094651	3001547	SCOP2B (2022-06-29)
I [auth K]	SCOP2B Superfamily	Photosystem II reaction center protein K PsbK	8093946	3001585	SCOP2B (2022-06-29)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Photosystem II protein D1	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor oxidoreductase activity oxidoreductase activity, acting on diphenols and related substances as donors catalytic activity electron transfer activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity oxygen evolving activity chlorophyll binding binding organic cyclic compound binding tetrapyrrole binding cation binding transition metal ion binding iron ion binding oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor oxidoreductase activity oxidoreductase activity, acting on diphenols and related substances as donors catalytic activity electron transfer activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity oxygen evolving activity chlorophyll binding binding organic cyclic compound binding tetrapyrrole binding cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction photosynthetic electron transport chain cellular metabolic process electron transport chain photosynthetic electron transport in photosystem II metabolic process cellular process generation of precursor metabolites and energy response to stimulus response to chemical response to stress response to herbicide response to toxic substance	protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle photosynthetic membrane thylakoid non-membrane-bounded organelle chloroplast thylakoid membrane protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle photosynthetic membrane thylakoid non-membrane-bounded organelle chloroplast thylakoid membrane membrane-bounded organelle plastid membrane plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid organelle envelope bounding membrane of organelle plastid envelope chloroplast intracellular membrane-bounded organelle thylakoid membrane chloroplast thylakoid outer membrane cytoplasm organelle membrane
J [auth 2]	Chain U, Predicted protein	-	photosynthesis protein-containing complex organization photosynthesis, light reaction cellular metabolic process generation of precursor metabolites and energy photosystem II assembly cellular component organization cellular component biogenesis cellular component assembly protein-containing complex assembly cellular process metabolic process cellular component organization or biogenesis organonitrogen compound metabolic process photosynthesis protein-containing complex organization photosynthesis, light reaction cellular metabolic process generation of precursor metabolites and energy photosystem II assembly cellular component organization cellular component biogenesis cellular component assembly protein-containing complex assembly cellular process metabolic process cellular component organization or biogenesis organonitrogen compound metabolic process photosystem II repair photosynthesis, light harvesting primary metabolic process organic substance metabolic process protein repair protein metabolic process macromolecule metabolic process	protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle photosynthetic membrane thylakoid non-membrane-bounded organelle membrane-bounded organelle protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle photosynthetic membrane thylakoid non-membrane-bounded organelle membrane-bounded organelle plastid intracellular membrane-bounded organelle plastid thylakoid plastid thylakoid lumen chloroplast thylakoid lumen chloroplast thylakoid cytoplasm thylakoid lumen chloroplast
K [auth 1]	Photosystem II reaction center protein Ycf12	-	photosynthesis cellular metabolic process metabolic process cellular process	protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle photosynthetic membrane thylakoid non-membrane-bounded organelle chloroplast thylakoid membrane protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle photosynthetic membrane thylakoid non-membrane-bounded organelle chloroplast thylakoid membrane membrane-bounded organelle plastid membrane plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid organelle envelope bounding membrane of organelle plastid envelope chloroplast intracellular membrane-bounded organelle thylakoid membrane chloroplast thylakoid outer membrane cytoplasm organelle membrane
B	Photosystem II CP47 reaction center protein	electron transfer activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity chlorophyll binding binding organic cyclic compound binding tetrapyrrole binding	photosynthesis photosynthesis, light reaction photosynthetic electron transport chain cellular metabolic process electron transport chain photosynthetic electron transport in photosystem II metabolic process cellular process generation of precursor metabolites and energy	protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle photosynthetic membrane thylakoid non-membrane-bounded organelle chloroplast thylakoid membrane protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle photosynthetic membrane thylakoid non-membrane-bounded organelle chloroplast thylakoid membrane membrane-bounded organelle plastid membrane plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid organelle envelope bounding membrane of organelle plastid envelope chloroplast intracellular membrane-bounded organelle thylakoid membrane chloroplast thylakoid outer membrane cytoplasm organelle membrane
C	Photosystem II CP43 reaction center protein	electron transfer activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity chlorophyll binding binding organic cyclic compound binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction photosynthetic electron transport chain cellular metabolic process electron transport chain photosynthetic electron transport in photosystem II metabolic process cellular process generation of precursor metabolites and energy	protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle photosynthetic membrane thylakoid non-membrane-bounded organelle chloroplast thylakoid membrane protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle photosynthetic membrane thylakoid non-membrane-bounded organelle chloroplast thylakoid membrane membrane-bounded organelle plastid membrane plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid organelle envelope bounding membrane of organelle plastid envelope chloroplast intracellular membrane-bounded organelle thylakoid membrane chloroplast thylakoid outer membrane cytoplasm organelle membrane
D	Photosystem II D2 protein	electron transfer activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity oxidoreductase activity oxygen evolving activity catalytic activity chlorophyll binding binding organic cyclic compound binding tetrapyrrole binding cation binding transition metal ion binding iron ion binding ion binding metal ion binding electron transfer activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity oxidoreductase activity oxygen evolving activity catalytic activity chlorophyll binding binding organic cyclic compound binding tetrapyrrole binding cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction photosynthetic electron transport chain cellular metabolic process electron transport chain photosynthetic electron transport in photosystem II metabolic process cellular process generation of precursor metabolites and energy	protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle photosynthetic membrane thylakoid non-membrane-bounded organelle chloroplast thylakoid membrane protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle photosynthetic membrane thylakoid non-membrane-bounded organelle chloroplast thylakoid membrane membrane-bounded organelle plastid membrane plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid organelle envelope bounding membrane of organelle plastid envelope chloroplast intracellular membrane-bounded organelle thylakoid membrane chloroplast thylakoid outer membrane cytoplasm organelle membrane
E	Cytochrome b559 subunit alpha	binding organic cyclic compound binding tetrapyrrole binding heme binding electron transfer activity cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction photosynthetic electron transport chain cellular metabolic process electron transport chain metabolic process cellular process generation of precursor metabolites and energy	protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex cellular anatomical entity photosystem II reaction center intracellular organelle organelle intracellular non-membrane-bounded organelle photosynthetic membrane thylakoid non-membrane-bounded organelle protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex cellular anatomical entity photosystem II reaction center intracellular organelle organelle intracellular non-membrane-bounded organelle photosynthetic membrane thylakoid non-membrane-bounded organelle chloroplast thylakoid membrane membrane-bounded organelle plastid membrane plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid organelle envelope bounding membrane of organelle plastid envelope chloroplast intracellular membrane-bounded organelle thylakoid membrane chloroplast thylakoid outer membrane cytoplasm organelle membrane
F	Cytochrome b559 subunit beta	binding organic cyclic compound binding tetrapyrrole binding heme binding electron transfer activity cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction photosynthetic electron transport chain cellular metabolic process electron transport chain metabolic process cellular process generation of precursor metabolites and energy	protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex cellular anatomical entity photosystem II reaction center intracellular organelle organelle intracellular non-membrane-bounded organelle photosynthetic membrane thylakoid non-membrane-bounded organelle protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex cellular anatomical entity photosystem II reaction center intracellular organelle organelle intracellular non-membrane-bounded organelle photosynthetic membrane thylakoid non-membrane-bounded organelle chloroplast thylakoid membrane membrane-bounded organelle plastid membrane plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid organelle envelope bounding membrane of organelle plastid envelope chloroplast intracellular membrane-bounded organelle thylakoid membrane chloroplast thylakoid outer membrane cytoplasm organelle membrane
G [auth H]	Photosystem II reaction center protein H	ion binding binding anion binding phosphate ion binding small molecule binding	regulation of protein stability biological regulation regulation of biological quality protein stabilization photosynthesis cellular metabolic process metabolic process cellular process	protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle photosynthetic membrane thylakoid non-membrane-bounded organelle chloroplast thylakoid membrane protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle photosynthetic membrane thylakoid non-membrane-bounded organelle chloroplast thylakoid membrane membrane-bounded organelle plastid membrane plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid organelle envelope bounding membrane of organelle plastid envelope chloroplast intracellular membrane-bounded organelle thylakoid membrane chloroplast thylakoid outer membrane cytoplasm organelle membrane
H [auth I]	Photosystem II reaction center protein I	-	photosynthesis cellular metabolic process metabolic process cellular process	protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex cellular anatomical entity photosystem II reaction center intracellular organelle organelle intracellular non-membrane-bounded organelle photosynthetic membrane thylakoid non-membrane-bounded organelle protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex cellular anatomical entity photosystem II reaction center intracellular organelle organelle intracellular non-membrane-bounded organelle photosynthetic membrane thylakoid non-membrane-bounded organelle chloroplast thylakoid membrane membrane-bounded organelle plastid membrane plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid organelle envelope bounding membrane of organelle plastid envelope chloroplast intracellular membrane-bounded organelle thylakoid membrane chloroplast thylakoid outer membrane cytoplasm organelle membrane
I [auth K]	Photosystem II reaction center protein K	-	photosynthesis cellular metabolic process metabolic process cellular process	protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex cellular anatomical entity photosystem II reaction center intracellular organelle organelle intracellular non-membrane-bounded organelle photosynthetic membrane thylakoid non-membrane-bounded organelle protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex cellular anatomical entity photosystem II reaction center intracellular organelle organelle intracellular non-membrane-bounded organelle photosynthetic membrane thylakoid non-membrane-bounded organelle chloroplast thylakoid membrane membrane-bounded organelle plastid membrane plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid organelle envelope bounding membrane of organelle plastid envelope chloroplast intracellular membrane-bounded organelle thylakoid membrane chloroplast thylakoid outer membrane cytoplasm organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR005867	Photosystem II protein D1	Family
A	IPR036854	Photosystem II protein D1/D2 superfamily	Homologous Superfamily
A	IPR000484	Photosynthetic reaction centre, L/M	Family
J [auth 2]	IPR025585	Photosystem II Psb27	Family
J [auth 2]	IPR038450	Photosystem II Psb27 superfamily	Homologous Superfamily
K [auth 1]	IPR010284	Photosystem II reaction center protein Ycf12	Family
B	IPR036001	Photosystem antenna protein-like superfamily	Homologous Superfamily
B	IPR000932	Photosystem antenna protein-like	Family
B	IPR017486	Photosystem II CP47 reaction centre protein	Family
C	IPR036001	Photosystem antenna protein-like superfamily	Homologous Superfamily
C	IPR000932	Photosystem antenna protein-like	Family
C	IPR005869	Photosystem II CP43 reaction centre protein	Family
C	IPR044900	Photosystem II CP43 reaction centre protein superfamily	Homologous Superfamily
D	IPR036854	Photosystem II protein D1/D2 superfamily	Homologous Superfamily
D	IPR000484	Photosynthetic reaction centre, L/M	Family
D	IPR005868	Photosystem II D2 protein	Family
E	IPR013081	Photosystem II cytochrome b559, N-terminal	Domain
E	IPR006217	Photosystem II cytochrome b559, alpha subunit	Family
E	IPR013082	Photosystem II cytochrome b559, alpha subunit, lumenal region	Domain
E	IPR037025	Photosystem II cytochrome b559, alpha subunit superfamily	Homologous Superfamily
E	IPR006216	Photosystem II cytochrome b559, conserved site	Conserved Site
F	IPR006241	Photosystem II cytochrome b559, beta subunit	Family
F	IPR013081	Photosystem II cytochrome b559, N-terminal	Domain
F	IPR006216	Photosystem II cytochrome b559, conserved site	Conserved Site
G [auth H]	IPR036863	Photosystem II reaction centre protein H superfamily	Homologous Superfamily
G [auth H]	IPR001056	Photosystem II reaction centre protein H	Family
H [auth I]	IPR037271	Photosystem II PsbI superfamily	Homologous Superfamily
H [auth I]	IPR003686	Photosystem II PsbI	Family
I [auth K]	IPR037270	Photosystem II PsbK superfamily	Homologous Superfamily
I [auth K]	IPR003687	Photosystem II PsbK	Family