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 8R2H | pdb_00008r2h

Cryo-EM structure of 1-deoxy-D-xylulose 5-phosphate synthase (DXPS) from Plasmodium falciparum

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BRnf-Nqre8r2hB1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Rnf-NqrECOD (v295.2)
Ae8r2hA01 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF:ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF02779Transketolase, pyrimidine binding domain (Transket_pyr)Transketolase, pyrimidine binding domainThis family includes transketolase enzymes, pyruvate dehydrogenases, and branched chain alpha-keto acid decarboxylases. Domain
A, B
PF132921-deoxy-D-xylulose-5-phosphate synthase (DXP_synthase_N)1-deoxy-D-xylulose-5-phosphate synthase- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
1-deoxy-D-xylulose-5-phosphate synthase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR005475Transketolase-like, pyrimidine-binding domainDomain
A, B
IPR005477Deoxyxylulose-5-phosphate synthaseFamily
A, B
IPR029061Thiamin diphosphate-binding foldHomologous Superfamily
A, B
IPR009014Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain IIHomologous Superfamily
A, B
IPR033248Transketolase, C-terminal domainDomain
A, B
IPR020826Transketolase binding siteBinding Site