8QU1 | pdb_00008qu1

mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth K]SCOP2B SuperfamilyRibosomal protein L13 8100460 3001134 SCOP2B (2022-06-29)
E [auth F]SCOP2B SuperfamilyRibosomal protein L4 8080706 3001146 SCOP2B (2022-06-29)
Z [auth 1]SCOP2B SuperfamilyZn-binding ribosomal proteins 8075050 3001320 SCOP2B (2022-06-29)
M [auth O]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8033689 3000995 SCOP2B (2022-06-29)
J [auth L]SCOP2B Superfamily50S Ribosomal protein L14-like 8072072 3000433 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
Y [auth 0]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
I [auth K]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
H [auth J]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. Domain
H [auth J]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domainDomain
G [auth I]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
F [auth H]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domainDomain
E [auth F]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
D [auth E]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
C [auth D]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
CA [auth 5]PF07147Mitochondrial 28S ribosomal protein S30 (PDCD9) (PDCD9)Mitochondrial 28S ribosomal protein S30 (PDCD9)- Family
BA [auth 3]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
X [auth Z]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
W [auth Y]PF06984Mitochondrial 39-S ribosomal protein L47 (MRP-L47) (MRP-L47)Mitochondrial 39-S ribosomal protein L47 (MRP-L47)- Family
V [auth X]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
T [auth V]PF17136Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)Large ribosomal subunit protein uL24, C-terminal domainThis entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].
Domain
T [auth V]PF00467KOW motif (KOW)KOW motif- Family
S [auth U]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
R [auth T]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
Q [auth S]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
P [auth R]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
O [auth Q]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
N [auth P]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
M [auth O]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
J [auth L]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
U [auth W]39S ribosomal protein L27, mitochondrial
Y [auth 0]39S ribosomal protein L32, mitochondrial
I [auth K]39S ribosomal protein L13, mitochondrial
H [auth J]39S ribosomal protein L11, mitochondrial
G [auth I]39S ribosomal protein L10, mitochondrial
F [auth H]39S ribosomal protein L9, mitochondrial
E [auth F]39S ribosomal protein L4, mitochondrial
D [auth E]39S ribosomal protein L3, mitochondrial
DA [auth 6]39S ribosomal protein L38, mitochondrial-
C [auth D]39S ribosomal protein L2, mitochondrial
CA [auth 5]39S ribosomal protein L37, mitochondrial
BA [auth 3]39S ribosomal protein L35, mitochondrial
AA [auth 2]39S ribosomal protein L34, mitochondrial
Z [auth 1]39S ribosomal protein L33, mitochondrial
X [auth Z]39S ribosomal protein L30, mitochondrial
W [auth Y]39S ribosomal protein L47, mitochondrial
V [auth X]39S ribosomal protein L28, mitochondrial
T [auth V]39S ribosomal protein L24, mitochondrial
mitochondrial tRNAVal---
S [auth U]39S ribosomal protein L23, mitochondrial
R [auth T]39S ribosomal protein L22, mitochondrial
Q [auth S]39S ribosomal protein L21, mitochondrial
P [auth R]39S ribosomal protein L20, mitochondrial
O [auth Q]39S ribosomal protein L19, mitochondrial
N [auth P]39S ribosomal protein L18, mitochondrial
M [auth O]39S ribosomal protein L17, mitochondrial
L [auth N]39S ribosomal protein L16, mitochondrial
K [auth M]39S ribosomal protein L15, mitochondrial
J [auth L]39S ribosomal protein L14, mitochondrial
16S ribosomal RNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
U [auth W]IPR001684Large ribosomal subunit protein bL27Family
Y [auth 0]IPR002677Large ribosomal subunit protein bL32Family
Y [auth 0]IPR051991Mitochondrial ribosomal protein bL32Family
Y [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
I [auth K]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
I [auth K]IPR005822Large ribosomal subunit protein uL13Family
I [auth K]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
I [auth K]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
H [auth J]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
H [auth J]IPR000911Ribosomal protein uL11Family
H [auth J]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
H [auth J]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
H [auth J]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
H [auth J]IPR006519Large ribosomal subunit protein uL11, bacteriaFamily
G [auth I]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
G [auth I]IPR001790Large ribosomal subunit protein uL10Family
G [auth I]IPR047865Large ribosomal subunit protein uL10, bacteria/organellaFamily
F [auth H]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
F [auth H]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
F [auth H]IPR054302Large ribosomal subunit protein bL9m, C-terminal domainDomain
F [auth H]IPR056864Large ribosomal subunit protein bL9m, N-terminal domainDomain
F [auth H]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
F [auth H]IPR000244Large ribosomal subunit protein bL9Family
E [auth F]IPR013005Large ribosomal subunit protein uL4-likeFamily
E [auth F]IPR002136Large ribosomal subunit protein uL4Family
E [auth F]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
D [auth E]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
D [auth E]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
D [auth E]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
D [auth E]IPR000597Large ribosomal subunit protein uL3Family
DA [auth 6]IPR036610PEBP-like superfamilyHomologous Superfamily
DA [auth 6]IPR008914Phosphatidylethanolamine-binding proteinFamily
DA [auth 6]IPR035810Phosphatidylethanolamine-binding protein, eukaryoticFamily
C [auth D]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
C [auth D]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
C [auth D]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
C [auth D]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
C [auth D]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
C [auth D]IPR002171Large ribosomal subunit protein uL2Family
CA [auth 5]IPR052482Mitochondrial large ribosomal subunit mL37Family
CA [auth 5]IPR010793Large ribosomal subunit protein mL37/mL65Family
BA [auth 3]IPR021137Large ribosomal subunit protein bL35-likeFamily
BA [auth 3]IPR019338Large ribosomal subunit protein bL35mFamily
BA [auth 3]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
AA [auth 2]IPR000271Large ribosomal subunit protein bL34Family
Z [auth 1]IPR052008Mitochondrial ribosomal protein bL33Family
Z [auth 1]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Z [auth 1]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
Z [auth 1]IPR001705Large ribosomal subunit protein bL33Family
X [auth Z]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
X [auth Z]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
X [auth Z]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
W [auth Y]IPR038340MRP-L47 superfamily, mitochondrialHomologous Superfamily
W [auth Y]IPR010729Large ribosomal subunit protein uL29m, mitochondrialFamily
V [auth X]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
V [auth X]IPR026569Large ribosomal subunit protein bL28Family
V [auth X]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
T [auth V]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
T [auth V]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
T [auth V]IPR003256Large ribosomal subunit protein uL24Family
T [auth V]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
T [auth V]IPR005824KOWDomain
T [auth V]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
S [auth U]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
S [auth U]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
S [auth U]IPR013025Large ribosomal subunit protein uL23-likeFamily
R [auth T]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
R [auth T]IPR001063Large ribosomal subunit protein uL22Family
R [auth T]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
Q [auth S]IPR028909Large ribosomal subunit protein bL21-likeFamily
Q [auth S]IPR001787Large ribosomal subunit protein bL21Family
Q [auth S]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
P [auth R]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
P [auth R]IPR005813Large ribosomal subunit protein bL20Family
O [auth Q]IPR001857Large ribosomal subunit protein bL19Family
O [auth Q]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
O [auth Q]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
N [auth P]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
N [auth P]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
M [auth O]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
M [auth O]IPR000456Large ribosomal subunit protein bL17Family
L [auth N]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
L [auth N]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
L [auth N]IPR016180Large ribosomal subunit protein uL16 domainDomain
L [auth N]IPR047873Large ribosomal subunit protein uL16Family
K [auth M]IPR021131Large ribosomal subunit protein uL15/eL18Domain
K [auth M]IPR030878Large ribosomal subunit protein uL15Family
K [auth M]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
K [auth M]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
J [auth L]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
J [auth L]IPR000218Large ribosomal subunit protein uL14Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
U [auth W]PharosQ9P0M9
Y [auth 0]PharosQ9BYC8
I [auth K]PharosQ9BYD1
H [auth J]PharosQ9Y3B7
G [auth I]PharosQ7Z7H8
F [auth H]PharosQ9BYD2
E [auth F]PharosQ9BYD3
D [auth E]PharosP09001
C [auth D]PharosQ5T653
CA [auth 5]PharosQ9BZE1
BA [auth 3]PharosQ9NZE8
AA [auth 2]PharosQ9BQ48
Z [auth 1]PharosO75394
X [auth Z]PharosQ8TCC3
W [auth Y]PharosQ9HD33
V [auth X]PharosQ13084
T [auth V]PharosQ96A35
S [auth U]PharosQ16540
R [auth T]PharosQ9NWU5
P [auth R]PharosQ9BYC9
O [auth Q]PharosP49406
N [auth P]PharosQ9H0U6
M [auth O]PharosQ9NRX2
L [auth N]PharosQ9NX20
K [auth M]PharosQ9P015
J [auth L]PharosQ6P1L8