8QPC

18mer DNA mimic Foldamer with an Aromatic linker in complex with Sac7d V26A/M29A protein

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth AA]	SCOP2B Superfamily	Chromo domain-like	8034344	3000161	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth AA]	PF02294	e8qpcAA1	A: beta barrels	X: SH3	H: Chromo domain-like (From Topology)	T: Chromo domain-like	F: PF02294	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth AA]	DNA-binding protein 7b	DNA binding binding organic cyclic compound binding nucleic acid binding endonuclease activity nuclease activity hydrolase activity, acting on ester bonds catalytic activity, acting on RNA RNA endonuclease activity catalytic activity, acting on a nucleic acid RNA nuclease activity hydrolase activity catalytic activity	-	intracellular anatomical structure cytoplasm cellular anatomical entity
B	N-[2-(2-methyl-1,3-dioxolan-2-yl)phenyl]-2-{[5-(trifluoromethyl)pyridin-2-yl]amino}pyridine-4-carboxamide	-	-	-
C	N-[2-(2-methyl-1,3-dioxolan-2-yl)phenyl]-2-{[5-(trifluoromethyl)pyridin-2-yl]amino}pyridine-4-carboxamide	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AA]	IPR016197	Chromo-like domain superfamily	Homologous Superfamily
A [auth AA]	IPR003212	DNA-binding protein 7a-e	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B	DBU	Parent Component: THR RESID: AA0182 PSI-MOD : dehydrobutyrine (Thr) MOD:00190 , (Z)-dehydrobutyrine (Thr) MOD:01471
B	V4F	Parent Component: V4F RESID: AA0182
B	V53	Parent Component: ES1 RESID: AA0182
B	V5F	RESID: AA0182
C	DBB	RESID: AA0182 , AA0112 PSI-MOD : dehydrobutyrine (Thr) MOD:00190 , (Z)-dehydrobutyrine (Thr) MOD:01471 , (2S,3S,2'R)-3-methyllanthionine MOD:00121
C	V4F	Parent Component: V4F RESID: AA0182 , AA0112
C	V53	Parent Component: ES1 RESID: AA0182 , AA0112
C	V5F	RESID: AA0182 , AA0112

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.