8QPC | pdb_00008qpc

18mer DNA mimic Foldamer with an Aromatic linker in complex with Sac7d V26A/M29A protein

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth AA]	SCOP2B Superfamily	Chromo domain-like	8034344	3000161	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth AA]	PF02294	7kD DNA-binding domain (7kD_DNA_binding)	7kD DNA-binding domain	This family contains members of the hyper-thermophilic archaebacterium 7kD DNA-binding/endoribonuclease P2 family. There are five 7kD DNA-binding proteins, 7a-7e, found as monomers in the cell. Protein 7e shows the tightest DNA-binding ability.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth AA]	DNA-binding protein 7b	DNA binding binding nucleic acid binding endonuclease activity nuclease activity catalytic activity, acting on RNA RNA endonuclease activity catalytic activity, acting on a nucleic acid RNA nuclease activity catalytic activity	-	cellular anatomical structure intracellular anatomical structure cytoplasm
B	N-[2-(2-methyl-1,3-dioxolan-2-yl)phenyl]-2-{[5-(trifluoromethyl)pyridin-2-yl]amino}pyridine-4-carboxamide	-	-	-
C	N-[2-(2-methyl-1,3-dioxolan-2-yl)phenyl]-2-{[5-(trifluoromethyl)pyridin-2-yl]amino}pyridine-4-carboxamide	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AA]	IPR016197	Chromo-like domain superfamily	Homologous Superfamily
A [auth AA]	IPR003212	DNA-binding protein 7a-e	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B	DBU	Parent Component: THR RESID: AA0182 PSI-MOD : dehydrobutyrine (Thr) MOD:00190 , (Z)-dehydrobutyrine (Thr) MOD:01471
B	V4F	Parent Component: V4F RESID: AA0182
B	V53	Parent Component: ES1 RESID: AA0182
B	V5F	RESID: AA0182
C	DBB	RESID: AA0182 , AA0112 PSI-MOD : dehydrobutyrine (Thr) MOD:00190 , (Z)-dehydrobutyrine (Thr) MOD:01471 , (2S,3S,2'R)-3-methyllanthionine MOD:00121
C	V4F	Parent Component: V4F RESID: AA0182 , AA0112
C	V53	Parent Component: ES1 RESID: AA0182 , AA0112
C	V5F	RESID: AA0182 , AA0112

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.