8QMA | pdb_00008qma

Structure of the plastid-encoded RNA polymerase complex (PEP) from Sinapis alba

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J [auth S]	PAS_3	e8qmaS01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PAS_3	ECOD (v295.2)
I [auth R]	PAS_3	e8qmaR01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PAS_3	ECOD (v295.2)
G [auth O]	PAS_3	e8qmaO02	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PAS_3	ECOD (v295.2)
F [auth N]	DNA_topoisoIV	e8qmaN1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
E [auth M]	PAS_3	e8qmaM01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PAS_3	ECOD (v295.2)
D [auth L]	PAS_3	e8qmaL01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PAS_3	ECOD (v295.2)
S [auth T]	PAS_3	e8qmaT01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PAS_3	ECOD (v295.2)
R [auth J]	PAS_3	e8qmaJ01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PAS_3	ECOD (v295.2)
Q [auth I]	PAS_3	e8qmaI01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PAS_3	ECOD (v295.2)
N [auth D]	DNA_topoisoIV	e8qmaD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
M [auth C]	PAS_3	e8qmaC01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PAS_3	ECOD (v295.2)
K [auth A]	PAS_3	e8qmaA01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PAS_3	ECOD (v295.2)
A [auth G]	PAS_3	e8qmaG01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PAS_3	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
J [auth S]	PAP6	-	-	-
I [auth R]	PTAC18	-	-	-
H [auth P]	PAP12 (DNA-directed RNA polymerase subunit omega)	-	-	-
G [auth O]	PAP11	-	-	-
E [auth M], F [auth N]	PAP10	-	-	-
D [auth L]	PAP9	-	-	-
C [auth K]	PAP8	-	-	-
B [auth H]	PAP5	-	-	-
S [auth T]	DNA-directed RNA polymerase subunit beta'	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding DNA binding nucleic acid binding DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding DNA binding nucleic acid binding DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups transition metal ion binding zinc ion binding	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast
R [auth J]	PAP7	-	-	-
Q [auth I]	FLN2	-	-	-
P [auth F]	PAP3	-	-	-
O [auth E]	PAP1	-	-	-
M [auth C], N [auth D]	DNA-directed RNA polymerase subunit alpha	-	-	-
L [auth B]	DNA-directed RNA polymerase subunit beta''	DNA binding binding nucleic acid binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity DNA binding binding nucleic acid binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast
K [auth A]	DNA-directed RNA polymerase subunit beta	DNA binding binding nucleic acid binding DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups ribonucleoside binding nucleoside binding DNA binding binding nucleic acid binding DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups ribonucleoside binding nucleoside binding heterocyclic compound binding carbohydrate derivative binding small molecule binding	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast
A [auth G]	PAP4	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
S [auth T]	IPR045867	DNA-directed RNA polymerase, subunit beta-prime	Family
S [auth T]	IPR034678	DNA-directed RNA polymerase subunit RpoC1	Family
S [auth T]	IPR042102	RNA polymerase Rpb1, domain 3 superfamily	Homologous Superfamily
S [auth T]	IPR000722	RNA polymerase, alpha subunit	Domain
S [auth T]	IPR044893	RNA polymerase Rpb1, clamp domain superfamily	Homologous Superfamily
S [auth T]	IPR006592	RNA polymerase, N-terminal	Domain
S [auth T]	IPR007080	RNA polymerase Rpb1, domain 1	Domain
L [auth B]	IPR007081	RNA polymerase Rpb1, domain 5	Domain
L [auth B]	IPR007083	RNA polymerase Rpb1, domain 4	Domain
L [auth B]	IPR038120	RNA polymerase Rpb1, funnel domain superfamily	Homologous Superfamily
L [auth B]	IPR050254	DNA-directed RNA polymerase, subunit beta'', eukaryote	Family
L [auth B]	IPR012756	DNA-directed RNA polymerase, subunit beta''	Family
L [auth B]	IPR042102	RNA polymerase Rpb1, domain 3 superfamily	Homologous Superfamily
K [auth A]	IPR007642	RNA polymerase Rpb2, domain 2	Domain
K [auth A]	IPR015712	DNA-directed RNA polymerase, subunit 2	Family
K [auth A]	IPR037033	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	Homologous Superfamily
K [auth A]	IPR042107	DNA-directed RNA polymerase, beta subunit, external 1 domain superfamily	Homologous Superfamily
K [auth A]	IPR037034	RNA polymerase Rpb2, domain 2 superfamily	Homologous Superfamily
K [auth A]	IPR007120	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain	Domain
K [auth A]	IPR007121	RNA polymerase, beta subunit, conserved site	Conserved Site
K [auth A]	IPR007645	RNA polymerase Rpb2, domain 3	Domain
K [auth A]	IPR014724	RNA polymerase Rpb2, OB-fold	Homologous Superfamily
K [auth A]	IPR010243	DNA-directed RNA polymerase beta subunit, bacterial-type	Family
K [auth A]	IPR007641	RNA polymerase Rpb2, domain 7	Domain