8QE9 | pdb_00008qe9

Complex between the 80a-Sak SSAP and the SaPI2 Stl master regulator

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AA [auth 2L], BA [auth 2M], CA [auth 2N], DA [auth 2O], EA [auth 2P], AA [auth 2L], BA [auth 2M], CA [auth 2N], DA [auth 2O], EA [auth 2P], FA [auth 2Q], GA [auth 3A], HA [auth 3B], IA [auth 3C], JA [auth 3D], KA [auth 3E], LA [auth 3F], MA [auth 3G], NA [auth 3I], OA [auth 3J], PA [auth 3L], QA [auth 3M], R [auth 2A], RA [auth 3N], S [auth 2B], SA [auth 3O], T [auth 2C], TA [auth 3P], U [auth 2D], UA [auth 3Q], V [auth 2E], W [auth 2F], X [auth 2G], Y [auth 2I], Z [auth 2J]	PF13443	Cro/C1-type HTH DNA-binding domain (HTH_26)	Cro/C1-type HTH DNA-binding domain	This is a helix-turn-helix domain that probably binds to DNA.	Domain
A [auth 1A], AB [auth 4F], B [auth 1B], BB [auth 4G], C [auth 1C], A [auth 1A], AB [auth 4F], B [auth 1B], BB [auth 4G], C [auth 1C], CB [auth 4H], D [auth 1D], DB [auth 4I], E [auth 1E], EB [auth 4J], F [auth 1F], FB [auth 4K], G [auth 1G], GB [auth 4L], H [auth 1H], HB [auth 4M], I [auth 1I], IB [auth 4N], J [auth 1J], JB [auth 4O], K [auth 1K], KB [auth 4P], L [auth 1L], LB [auth 4Q], M [auth 1M], N [auth 1N], O [auth 1O], P [auth 1P], Q [auth 1Q], VA [auth 4A], WA [auth 4B], XA [auth 4C], YA [auth 4D], ZA [auth 4E]	PF06378	Sak Single Strand Annealing Protein (SSAP_Sak)	Sak Single Strand Annealing Protein	This family represents the Sak Single Strand Annealing Protein (SSAP) from Staphylococcal Bacteriophage 80alpha which belongs to Rad52-like superfamily. The Sak protein from phage 80alpha shares similarities with other SSAPs, such as Red-beta from ph ...	This family represents the Sak Single Strand Annealing Protein (SSAP) from Staphylococcal Bacteriophage 80alpha which belongs to Rad52-like superfamily. The Sak protein from phage 80alpha shares similarities with other SSAPs, such as Red-beta from phage alpha and RAD52 from eukaryotes. SSAPs like Sak play a crucial role in homologous recombination by promoting the annealing of complementary single-stranded DNA. Sak adopts a similar to other SSAPs structure and shows the groove commonly seen in SSAPs to accommodate ssDNA in the outer surface of the torus, known as the ssDNA binding groove or ssDBG [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth 2L], BA [auth 2M], CA [auth 2N], DA [auth 2O], EA [auth 2P], AA [auth 2L], BA [auth 2M], CA [auth 2N], DA [auth 2O], EA [auth 2P], FA [auth 2Q], GA [auth 3A], HA [auth 3B], IA [auth 3C], JA [auth 3D], KA [auth 3E], LA [auth 3F], MA [auth 3G], NA [auth 3I], OA [auth 3J], PA [auth 3L], QA [auth 3M], R [auth 2A], RA [auth 3N], S [auth 2B], SA [auth 3O], T [auth 2C], TA [auth 3P], U [auth 2D], UA [auth 3Q], V [auth 2E], W [auth 2F], X [auth 2G], Y [auth 2I], Z [auth 2J]	Helix-turn-helix XRE family protein	DNA binding binding nucleic acid binding	-	-
A [auth 1A], AB [auth 4F], B [auth 1B], BB [auth 4G], C [auth 1C], A [auth 1A], AB [auth 4F], B [auth 1B], BB [auth 4G], C [auth 1C], CB [auth 4H], D [auth 1D], DB [auth 4I], E [auth 1E], EB [auth 4J], F [auth 1F], FB [auth 4K], G [auth 1G], GB [auth 4L], H [auth 1H], HB [auth 4M], I [auth 1I], IB [auth 4N], J [auth 1J], JB [auth 4O], K [auth 1K], KB [auth 4P], L [auth 1L], LB [auth 4Q], M [auth 1M], N [auth 1N], O [auth 1O], P [auth 1P], Q [auth 1Q], VA [auth 4A], WA [auth 4B], XA [auth 4C], YA [auth 4D], ZA [auth 4E]	DUF1071 domain-containing protein	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth 2L], BA [auth 2M], CA [auth 2N], DA [auth 2O], EA [auth 2P], AA [auth 2L], BA [auth 2M], CA [auth 2N], DA [auth 2O], EA [auth 2P], FA [auth 2Q], GA [auth 3A], HA [auth 3B], IA [auth 3C], JA [auth 3D], KA [auth 3E], LA [auth 3F], MA [auth 3G], NA [auth 3I], OA [auth 3J], PA [auth 3L], QA [auth 3M], R [auth 2A], RA [auth 3N], S [auth 2B], SA [auth 3O], T [auth 2C], TA [auth 3P], U [auth 2D], UA [auth 3Q], V [auth 2E], W [auth 2F], X [auth 2G], Y [auth 2I], Z [auth 2J]	IPR001387	Cro/C1-type, helix-turn-helix domain	Domain
AA [auth 2L], BA [auth 2M], CA [auth 2N], DA [auth 2O], EA [auth 2P], AA [auth 2L], BA [auth 2M], CA [auth 2N], DA [auth 2O], EA [auth 2P], FA [auth 2Q], GA [auth 3A], HA [auth 3B], IA [auth 3C], JA [auth 3D], KA [auth 3E], LA [auth 3F], MA [auth 3G], NA [auth 3I], OA [auth 3J], PA [auth 3L], QA [auth 3M], R [auth 2A], RA [auth 3N], S [auth 2B], SA [auth 3O], T [auth 2C], TA [auth 3P], U [auth 2D], UA [auth 3Q], V [auth 2E], W [auth 2F], X [auth 2G], Y [auth 2I], Z [auth 2J]	IPR010982	Lambda repressor-like, DNA-binding domain superfamily	Homologous Superfamily
A [auth 1A], AB [auth 4F], B [auth 1B], BB [auth 4G], C [auth 1C], A [auth 1A], AB [auth 4F], B [auth 1B], BB [auth 4G], C [auth 1C], CB [auth 4H], D [auth 1D], DB [auth 4I], E [auth 1E], EB [auth 4J], F [auth 1F], FB [auth 4K], G [auth 1G], GB [auth 4L], H [auth 1H], HB [auth 4M], I [auth 1I], IB [auth 4N], J [auth 1J], JB [auth 4O], K [auth 1K], KB [auth 4P], L [auth 1L], LB [auth 4Q], M [auth 1M], N [auth 1N], O [auth 1O], P [auth 1P], Q [auth 1Q], VA [auth 4A], WA [auth 4B], XA [auth 4C], YA [auth 4D], ZA [auth 4E]	IPR009425	SSAP, RNA binding domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.