8PVS | pdb_00008pvs

Targeting extended blood antigens by Akkermansia muciniphila enzymes unveils a missing link for generating universal donor blood


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF23764GLAA-B beta-barrel domain II (Beta-barrel_GLAA-B_II)GLAA-B beta-barrel domain IIThis entry represents the second beta-barrel domain found in Alpha-1,3-galactosidase A-B (GLAA-B)from bacteria. This proteins share a domain architecture consisting of a core beta-helix surrounded by two small beta-barrel domains (domains I and II), ...This entry represents the second beta-barrel domain found in Alpha-1,3-galactosidase A-B (GLAA-B)from bacteria. This proteins share a domain architecture consisting of a core beta-helix surrounded by two small beta-barrel domains (domains I and II), which are involved in protein dimerization. The alpha-helix of domain II folds over and along the wall of the active site of the adjacent monomer, with several residues protruding into the cleft that contains the active site pocket [1]. Proteins GLAA-B are alpha-galactosidases grouped in the GH110 subfamily by its narrow subtract specificity. This remove branched alpha-1,3-linked galactose residues present in blood group B antigens [2].
Domain
A, B
PF23763GLAA-B beta-barrel domain I (Beta-barrel_GLAA-B_I)GLAA-B beta-barrel domain IThis entry represents the first beta-barrel domain found towards the N-terminal in Alpha-1,3-galactosidase A-B (GLAA-B)from bacteria. This proteins share a domain architecture consisting of a core beta-helix surrounded by two small beta-barrel domain ...This entry represents the first beta-barrel domain found towards the N-terminal in Alpha-1,3-galactosidase A-B (GLAA-B)from bacteria. This proteins share a domain architecture consisting of a core beta-helix surrounded by two small beta-barrel domains (domains I and II), which are involved in protein dimerization [1]. GLAA-B are alpha-galactosidases grouped in the GH110 subfamily by its narrow subtract specificity. This proteins remove branched alpha-1,3-linked galactose residues present in blood group B antigens [2].
Domain
A, B
PF08305NPCBM/NEW2 domain (NPCBM)NPCBM/NEW2 domainThis novel putative carbohydrate binding module (NPCBM) domain is found at the N-terminus of glycosyl hydrolase family 98 proteins [1]. This domain has also been called the NEW2 domain [2]. NPCBM domains found in bacterial conflict systems are predi ...This novel putative carbohydrate binding module (NPCBM) domain is found at the N-terminus of glycosyl hydrolase family 98 proteins [1]. This domain has also been called the NEW2 domain [2]. NPCBM domains found in bacterial conflict systems are predicted to interact with invasive molecules and recruit downstream effectors [3].
Domain