8PV8

Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structure


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
N [auth LB]SCOP2B SuperfamilyTranslational proteins8106162 3000811 SCOP2B (2022-06-29)
O [auth LC]SCOP2B SuperfamilyRibosomal protein L48077111 3001146 SCOP2B (2022-06-29)
W [auth LN]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8106168 3000210 SCOP2B (2022-06-29)
AA [auth LR]SCOP2B SuperfamilyRibosomal protein L19 (L19e)8106186 3000890 SCOP2B (2022-06-29)
CA [auth LU]SCOP2B Superfamily60S Ribosomal protein L22e8106192 3002158 SCOP2B (2022-06-29)
DA [auth LV]SCOP2B Superfamily50S Ribosomal protein L14-like8106208 3000433 SCOP2B (2022-06-29)
FA [auth LY]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8106166 3000334 SCOP2B (2022-06-29)
IA [auth Lc]SCOP2B SuperfamilyL30e-like8106196 3001739 SCOP2B (2022-06-29)
KA [auth Le]SCOP2B SuperfamilyRibosomal protein L32e8106182 3000982 SCOP2B (2022-06-29)
LA [auth Lf]SCOP2B SuperfamilyTranslational proteins8106190 3000811 SCOP2B (2022-06-29)
MA [auth Lg]SCOP2B SuperfamilyRibosomal protein L34e-like8106200 3002203 SCOP2B (2022-06-29)
RA [auth Ll]SCOP2B SuperfamilyRibosomal protein L39e8106282 3001756 SCOP2B (2022-06-29)
SA [auth Lp]SCOP2B SuperfamilyZn-binding ribosomal proteins8106178 3001320 SCOP2B (2022-06-29)
E [auth CK]SCOP2B Superfamily50S Ribosomal protein L14-like8053081 3000433 SCOP2B (2022-06-29)
AB [auth LJ]SCOP2B SuperfamilyRL5-like8077505 3001709 SCOP2B (2022-06-29)
BB [auth LD]SCOP2B SuperfamilyTranslational machinery components8106194 3000571 SCOP2B (2022-06-29)
G [auth CN]SCOP2B SuperfamilyPentein8084662 3000640 SCOP2B (2022-06-29)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth C1]26S rRNA---
J [auth Cb]Zinc finger domain-containing protein
K [auth Cd]Nucleolar GTP-binding protein 2 -
L [auth Cz]rRNA-processing protein-
M [auth LA]60S ribosomal protein L2-like protein
N [auth LB]60S ribosomal protein L3-like protein
O [auth LC]60S ribosomal protein L4-like protein
P [auth LE]60S ribosomal protein L6
Q [auth LF]60S ribosomal protein l7-like protein
R [auth LG]60S ribosomal protein L8
S [auth LH]60S ribosomal protein l9-like protein---
B [auth C2]5.8S rRNA---
T [auth LK]60S ribosomal protein L12-like protein
U [auth LL]60S ribosomal protein L13
V [auth LM]60S ribosomal protein L14-like protein
W [auth LN]Ribosomal protein L15
X [auth LO]60S ribosomal protein L16-like protein
Y [auth LP]60S ribosomal protein l17-like protein
Z [auth LQ]Ribosomal protein L18-like protein
AA [auth LR]Ribosomal protein L19
BA [auth LS]60S ribosomal protein L20
CA [auth LU]60S ribosomal protein L22-like protein
C [auth CF]Large ribosomal subunit protein uL10
DA [auth LV]60S ribosomal protein l23-like protein
EA [auth LX]60S ribosomal protein L25-like protein
FA [auth LY]60S ribosomal protein L26-like protein
GA [auth LZ]60S ribosomal protein L27
HA [auth La]60S ribosomal protein L28-like protein---
IA [auth Lc]60S ribosomal protein l30-like protein -
JA [auth Ld]Putative 60S ribosomal protein
KA [auth Le]60S ribosomal protein L32-like protein
LA [auth Lf]60S ribosomal protein l33-like protein
MA [auth Lg]Ribosomal protein l34-like protein
D [auth CH]Nucleolar GTP-binding protein 1
NA [auth Lh]dolichyl-diphosphooligosaccharide--protein glycotransferase
OA [auth Li]60S ribosomal protein L36
PA [auth Lj]Ribosomal protein L37
QA [auth Lk]60S ribosomal protein L38-like protein---
RA [auth Ll]Ribosomal protein eL39
SA [auth Lp]60S ribosomal protein L43-like protein
TA [auth CT],
VA [auth CU]
Pre-rRNA-processing protein IPI3-
EB [auth CV],
UA [auth CW]
Pre-rRNA-processing protein RIX1-
WA [auth CS]Pre-rRNA-processing protein IPI1-
XA [auth CR]Protein SDA1-
E [auth CK]Ribosome biogenesis protein NSA2 homolog-
YA [auth Lt]Ribosomal protein
ZA [auth Ch]Ribosome assembly protein 4-
AB [auth LJ]Putative ribosomal protein
BB [auth LD]60S ribosomal protein l5-like protein
CB [auth C4]5S rRNA---
DB [auth Lq]Putative 60S ribosomal protein
FB [auth LT]60S ribosomal protein l21-like protein
GB [auth Lb]60S ribosomal protein L29
HB [auth Lr]60S ribosomal protein L41-A
F [auth CL]Putative GTP binding protein -
G [auth CN]Eukaryotic translation initiation factor 6
H [auth CO]DUF2423 domain-containing protein- -
I [auth CQ]Ribosome biogenesis protein RLP24-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth Cb]IPR003604Matrin/U1-C-like, C2H2-type zinc fingerDomain
J [auth Cb]IPR013087Zinc finger C2H2-typeDomain
J [auth Cb]IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
J [auth Cb]IPR022755Zinc finger, double-stranded RNA bindingDomain
K [auth Cd]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
K [auth Cd]IPR024929Nucleolar GTP-binding protein 2, circularly permuted GTPase motifDomain
K [auth Cd]IPR006073GTP binding domainDomain
K [auth Cd]IPR012971Nucleolar GTP-binding protein 2, N-terminal domainDomain
K [auth Cd]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
K [auth Cd]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
L [auth Cz]IPR005579Cgr1-likeFamily
M [auth LA]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
M [auth LA]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
M [auth LA]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
M [auth LA]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
M [auth LA]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
M [auth LA]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
M [auth LA]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
M [auth LA]IPR002171Large ribosomal subunit protein uL2Family
N [auth LB]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
N [auth LB]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
N [auth LB]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
N [auth LB]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
N [auth LB]IPR000597Large ribosomal subunit protein uL3Family
O [auth LC]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
O [auth LC]IPR002136Large ribosomal subunit protein uL4Family
O [auth LC]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
O [auth LC]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
O [auth LC]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
P [auth LE]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
P [auth LE]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
P [auth LE]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
P [auth LE]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
P [auth LE]IPR000915Large ribosomal subunit protein eL6Family
Q [auth LF]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
Q [auth LF]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
Q [auth LF]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
Q [auth LF]IPR039699Large ribosomal subunit protein uL30Family
Q [auth LF]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
Q [auth LF]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
R [auth LG]IPR001921Large ribosomal subunit protein eL8Family
R [auth LG]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
R [auth LG]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
R [auth LG]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
R [auth LG]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
T [auth LK]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
T [auth LK]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
T [auth LK]IPR000911Ribosomal protein uL11Family
T [auth LK]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
T [auth LK]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
T [auth LK]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
U [auth LL]IPR001380Large ribosomal subunit protein eL13Family
U [auth LL]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
V [auth LM]IPR039660Large ribosomal subunit protein eL14Family
V [auth LM]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
V [auth LM]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
V [auth LM]IPR002784Large ribosomal subunit protein eL14 domainDomain
V [auth LM]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
W [auth LN]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
W [auth LN]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
W [auth LN]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
W [auth LN]IPR000439Large ribosomal subunit protein eL15Family
X [auth LO]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
X [auth LO]IPR005822Large ribosomal subunit protein uL13Family
X [auth LO]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
X [auth LO]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
Y [auth LP]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
Y [auth LP]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
Y [auth LP]IPR001063Large ribosomal subunit protein uL22Family
Y [auth LP]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
Z [auth LQ]IPR021131Large ribosomal subunit protein uL15/eL18Domain
Z [auth LQ]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
Z [auth LQ]IPR000039Large ribosomal subunit protein eL18Family
Z [auth LQ]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
AA [auth LR]IPR016024Armadillo-type foldHomologous Superfamily
AA [auth LR]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
AA [auth LR]IPR004155PBS lyase HEAT-like repeatRepeat
AA [auth LR]IPR034085TOG domainDomain
AA [auth LR]IPR019399Parkin co-regulated proteinFamily
AA [auth LR]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
AA [auth LR]IPR021133HEAT, type 2Repeat
AA [auth LR]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
AA [auth LR]IPR011989Armadillo-like helicalHomologous Superfamily
AA [auth LR]IPR022716Gcn1, N-terminalDomain
AA [auth LR]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
AA [auth LR]IPR000196Large ribosomal subunit protein eL19 domainDomain
BA [auth LS]IPR028877Large ribosomal subunit protein eL20Family
BA [auth LS]IPR023573Large ribosomal subunit protein eL20 domainDomain
BA [auth LS]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
CA [auth LU]IPR002671Large ribosomal subunit protein eL22Family
CA [auth LU]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
C [auth CF]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
C [auth CF]IPR001790Large ribosomal subunit protein uL10Family
C [auth CF]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
C [auth CF]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
C [auth CF]IPR033867Ribosome assembly factor Mrt4Family
DA [auth LV]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
DA [auth LV]IPR000218Large ribosomal subunit protein uL14Family
DA [auth LV]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
EA [auth LX]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
EA [auth LX]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
EA [auth LX]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
EA [auth LX]IPR013025Large ribosomal subunit protein uL23-likeFamily
FA [auth LY]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
FA [auth LY]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
FA [auth LY]IPR005824KOWDomain
FA [auth LY]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
FA [auth LY]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
GA [auth LZ]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
GA [auth LZ]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
GA [auth LZ]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
GA [auth LZ]IPR001141Large ribosomal subunit protein eL27Family
GA [auth LZ]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
IA [auth Lc]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
IA [auth Lc]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
IA [auth Lc]IPR000231Large ribosomal subunit protein eL30Family
IA [auth Lc]IPR039109Large ribosomal subunit protein eL30-likeFamily
IA [auth Lc]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
JA [auth Ld]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
JA [auth Ld]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
JA [auth Ld]IPR000054Large ribosomal subunit protein eL31Family
KA [auth Le]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
KA [auth Le]IPR001515Large ribosomal subunit protein eL32Family
LA [auth Lf]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
LA [auth Lf]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
LA [auth Lf]IPR001780Large ribosomal subunit protein eL33Family
LA [auth Lf]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
MA [auth Lg]IPR008195Large ribosomal subunit protein eL34Family
MA [auth Lg]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
D [auth CH]IPR024926Nucleolar GTP-binding protein 1Family
D [auth CH]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
D [auth CH]IPR012973NOG, C-terminalDomain
D [auth CH]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
D [auth CH]IPR041623NOG1, N-terminal helical domainDomain
D [auth CH]IPR006073GTP binding domainDomain
D [auth CH]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
NA [auth Lh]IPR003674Oligosaccharyl transferase, STT3 subunitFamily
NA [auth Lh]IPR048307Oligosaccharyl transferase STT3, N-terminal domainDomain
NA [auth Lh]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
NA [auth Lh]IPR001854Large ribosomal subunit protein uL29Family
NA [auth Lh]IPR048999STT3/PglB/AglB, core domainDomain
OA [auth Li]IPR000509Large ribosomal subunit protein eL36Family
OA [auth Li]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
PA [auth Lj]IPR001569Large ribosomal subunit protein eL37Family
PA [auth Lj]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
PA [auth Lj]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
PA [auth Lj]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
RA [auth Ll]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
RA [auth Ll]IPR000077Large ribosomal subunit protein eL39Family
SA [auth Lp]IPR002674Large ribosomal subunit protein eL43Family
SA [auth Lp]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
SA [auth Lp]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
TA [auth CT],
VA [auth CU]
IPR001680WD40 repeatRepeat
TA [auth CT],
VA [auth CU]
IPR045227WD repeat-containing protein WDR18/Ipi3/RID3Family
TA [auth CT],
VA [auth CU]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
TA [auth CT],
VA [auth CU]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
EB [auth CV],
UA [auth CW]
IPR016024Armadillo-type foldHomologous Superfamily
EB [auth CV],
UA [auth CW]
IPR012583Pre-rRNA-processing protein RIX1, N-terminalDomain
WA [auth CS]IPR024679Pre-rRNA-processing protein Ipi1, N-terminalDomain
WA [auth CS]IPR016024Armadillo-type foldHomologous Superfamily
XA [auth CR]IPR048292SDA1, C-terminal domainDomain
XA [auth CR]IPR016024Armadillo-type foldHomologous Superfamily
XA [auth CR]IPR007949SDA1, middle domainDomain
XA [auth CR]IPR027312Sda1Family
XA [auth CR]IPR012977SDA1, N-terminalDomain
E [auth CK]IPR039411Ribosomal biogenesis NSA2 familyFamily
E [auth CK]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
YA [auth Lt]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
YA [auth Lt]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
YA [auth Lt]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
YA [auth Lt]IPR002143Large ribosomal subunit protein uL1Family
YA [auth Lt]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
ZA [auth Ch]IPR001680WD40 repeatRepeat
ZA [auth Ch]IPR019775WD40 repeat, conserved siteConserved Site
ZA [auth Ch]IPR020472G-protein beta WD-40 repeatRepeat
ZA [auth Ch]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
ZA [auth Ch]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
AB [auth LJ]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
AB [auth LJ]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
AB [auth LJ]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
AB [auth LJ]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
AB [auth LJ]IPR002132Large ribosomal subunit protein uL5Family
BB [auth LD]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
BB [auth LD]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
DB [auth Lq]IPR029004Ribosomal eL28/Mak16Domain
DB [auth Lq]IPR002672Large ribosomal subunit protein eL28Family
FB [auth LT]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
FB [auth LT]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
FB [auth LT]IPR001147Large ribosomal subunit protein eL21Family
FB [auth LT]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
GB [auth Lb]IPR002673Large ribosomal subunit protein eL29Family
HB [auth Lr]IPR007836Large ribosomal subunit protein eS32Family
F [auth CL]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
F [auth CL]IPR006073GTP binding domainDomain
F [auth CL]IPR014813Guanine nucleotide-binding protein-like 3, N-terminal domainDomain
F [auth CL]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
F [auth CL]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
G [auth CN]IPR002769Translation initiation factor IF6Family
H [auth CO]IPR019434Domain of unknown function DUF2423Domain
I [auth CQ]IPR011017TRASH domainDomain
I [auth CQ]IPR000988Large ribosomal subunit protein eL24-relatedFamily
I [auth CQ]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily