8OS2 | pdb_00008os2

Structure of the human LYVE-1 (lymphatic vessel endothelial receptor-1) hyaluronan binding domain in an unliganded state

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Kringle	e8os2A01	A: a/b three-layered sandwiches	X: ATP-grasp_6	H: ATP-grasp_6	T: ATP-grasp_6	F: Kringle	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00193	Extracellular link domain (Xlink)	Extracellular link domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Lymphatic vessel endothelial hyaluronic acid receptor 1	molecular transducer activity signaling receptor activity glycosaminoglycan binding binding carbohydrate derivative binding hyaluronic acid binding cargo receptor activity transmembrane signaling receptor activity	cell adhesion cell-matrix adhesion cell-substrate adhesion cellular process positive regulation of locomotion regulation of cell motility regulation of cellular process positive regulation of biological process positive regulation of cell migration positive regulation of cell motility regulation of cell migration cellular extravasation cell migration regulation of immune system process cell adhesion cell-matrix adhesion cell-substrate adhesion cellular process positive regulation of locomotion regulation of cell motility regulation of cellular process positive regulation of biological process positive regulation of cell migration positive regulation of cell motility regulation of cell migration cellular extravasation cell migration regulation of immune system process cell motility positive regulation of immune system process locomotion positive regulation of cellular process regulation of biological process regulation of leukocyte migration biological regulation positive regulation of leukocyte migration leukocyte migration immune system process regulation of locomotion positive regulation of cellular extravasation regulation of cellular extravasation response to stimulus response to stress response to wounding developmental process anatomical structure morphogenesis anatomical structure development carbohydrate derivative catabolic process catabolic process hyaluronan catabolic process glycosaminoglycan metabolic process carbohydrate derivative metabolic process aminoglycan catabolic process macromolecule catabolic process glycosaminoglycan catabolic process hyaluronan metabolic process aminoglycan metabolic process metabolic process macromolecule metabolic process localization import into cell transport receptor-mediated endocytosis endocytosis establishment of localization vesicle-mediated transport	cellular anatomical structure membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle cell periphery plasma membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR016187	C-type lectin fold	Homologous Superfamily
A	IPR000538	Link domain	Domain
A	IPR043210	CD44 antigen-like	Family
A	IPR016186	C-type lectin-like/link domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q9Y5Y7	ovarian cancer pancreatic intraductal papillary-mucinous neoplasm pituitary cancer adrenal cortex carcinoma breast carcinoma hepatocellular carcinoma limb-girdle muscular dystrophy lung carcinoma malignant pancreatic neoplasm non-small cell lung carcinoma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia psoriasis atopic eczema congestive heart failure ovarian cancer pancreatic intraductal papillary-mucinous neoplasm pituitary cancer adrenal cortex carcinoma breast carcinoma hepatocellular carcinoma limb-girdle muscular dystrophy lung carcinoma malignant pancreatic neoplasm non-small cell lung carcinoma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia psoriasis atopic eczema congestive heart failure interstitial cystitis lung adenocarcinoma lymphedema MALT lymphoma osteosarcoma pancreatic intraductal papillary-mucinous carcinoma Pick disease atrial fibrillation ductal breast carcinoma in situ invasive ductal breast carcinoma lung cancer malignant colon neoplasm medulloblastoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.