8OOF | pdb_00008oof

CryoEM Structure INO80core Hexasome complex Arp5 Ies6 refinement state1

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth J]	Cullin_AB	e8oofJ1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth J]	PF00022	Actin (Actin)	Actin	-	Family
A [auth I]	PF08265	YL1 nuclear protein C-terminal domain (YL1_C)	YL1 nuclear protein C-terminal domain	This domain is found in proteins of the YL1 family [1]. These proteins have been shown to be DNA-binding and may be a transcription factor [1]. This domain is found in proteins that are not YL1 proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth J]	Actin-related protein 5	-	protein localization to microtubule cytoskeleton establishment of protein localization cellular localization transport protein transport along microtubule microtubule-based protein transport protein localization to microtubule organizing center localization establishment of localization in cell protein localization to spindle pole body transport along microtubule intracellular protein localization protein transport along microtubule to mitotic spindle pole body intracellular transport protein localization to microtubule cytoskeleton establishment of protein localization cellular localization transport protein transport along microtubule microtubule-based protein transport protein localization to microtubule organizing center localization establishment of localization in cell protein localization to spindle pole body transport along microtubule intracellular protein localization protein transport along microtubule to mitotic spindle pole body intracellular transport establishment of protein localization to spindle pole body establishment of localization protein transport along microtubule to spindle pole body establishment of protein localization to organelle protein transport macromolecule localization protein localization to cytoskeleton protein localization to organelle microtubule-based transport cellular process cytoskeleton-dependent intracellular transport microtubule-based movement microtubule-based process protein localization to mitotic spindle pole body intracellular protein transport metaphase chromosome alignment attachment of spindle microtubules to kinetochore chromosome localization organelle localization nuclear chromosome segregation cell cycle chromosome segregation cell cycle process mitotic metaphase chromosome alignment mitotic cell cycle cellular component organization mitotic sister chromatid segregation cellular component organization or biogenesis mitotic nuclear division organelle fission attachment of mitotic spindle microtubules to kinetochore chromosome organization sister chromatid segregation organelle organization nuclear division mitotic cell cycle process sister chromatid biorientation mitotic sister chromatid biorientation	intracellular anatomical structure intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle cellular anatomical structure organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome mitotic spindle intracellular anatomical structure intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle cellular anatomical structure organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome mitotic spindle cytoskeleton spindle microtubule cytoskeleton membrane-bounded organelle protein-containing complex nucleus DASH complex nuclear protein-containing complex intracellular membrane-bounded organelle outer kinetochore
A [auth I]	Chromatin-remodeling complex subunit IES6	-	cellular component organization chromatin organization chromatin remodeling cellular process cellular component organization or biogenesis	membrane-bounded organelle ATPase complex protein-containing complex intracellular anatomical structure nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome chromosome intracellular organelle lumen intracellular organelle cellular anatomical structure membraneless organelle SWI/SNF superfamily-type complex membrane-bounded organelle ATPase complex protein-containing complex intracellular anatomical structure nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome chromosome intracellular organelle lumen intracellular organelle cellular anatomical structure membraneless organelle SWI/SNF superfamily-type complex INO80-type complex catalytic complex intracellular membraneless organelle chromatin intracellular membrane-bounded organelle Ino80 complex organelle lumen organelle nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth J]	IPR043129	ATPase, nucleotide binding domain	Homologous Superfamily
B [auth J]	IPR013959	DASH complex subunit Dad4	Family
B [auth J]	IPR004000	Actin family	Family
A [auth I]	IPR013272	Vps72/YL1, C-terminal	Domain
A [auth I]	IPR029525	INO80 complex, subunit Ies6	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.