Cryo-EM structure of an intermediate-state complex during the process of photosystem II repair
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| I [auth M] | SCOP2B Superfamily | Photosystem II reaction center protein M, PsbM | 8094094 | 3001573 | SCOP2B (2022-06-29) |
| H [auth L] | SCOP2B Superfamily | Photosystem II reaction center protein L, PsbL | 8094509 | 3001523 | SCOP2B (2022-06-29) |
| G [auth K] | SCOP2B Superfamily | Photosystem II reaction center protein K, PsbK | 8093946 | 3001585 | SCOP2B (2022-06-29) |
| F [auth I] | SCOP2B Superfamily | Photosystem II reaction center protein I, PsbI | 8094000 | 3001590 | SCOP2B (2022-06-29) |
| E [auth H] | SCOP2B Superfamily | Photosystem II 10 kDa phosphoprotein PsbH | 8094651 | 3001547 | SCOP2B (2022-06-29) |
| D [auth F] | SCOP2B Superfamily | Cytochrome b559 subunits | 8093904 | 3001602 | SCOP2B (2022-06-29) |
| C [auth E] | SCOP2B Superfamily | Cytochrome b559 subunits | 8094631 | 3001602 | SCOP2B (2022-06-29) |
| B [auth D] | SCOP2B Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8094383 | 3000736 | SCOP2B (2022-06-29) |
| Q [auth A] | SCOP2B Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8094419 | 3000736 | SCOP2B (2022-06-29) |
| P [auth C] | SCOP2B Superfamily | Photosystem II antenna protein-like | 8094477 | 3001674 | SCOP2B (2022-06-29) |
| M [auth Z] | SCOP2B Superfamily | PsbZ-like | 8094160 | 3001624 | SCOP2B (2022-06-29) |
| A [auth B] | SCOP2B Superfamily | Photosystem II antenna protein-like | 8094573 | 3001674 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A [auth B] | e8kdeB02 | A: alpha bundles | X: Helical bundle insertion in helicase domains | H: Helical bundle in Hef helicase | T: Helical bundle in Hef helicase | F: | ECOD (develop294) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| H [auth L] | PF02419 | PsbL protein (PsbL) | PsbL protein | - | Family |
| F [auth I] | PF02532 | Photosystem II reaction centre I protein (PSII 4.8 kDa protein) (PsbI) | Photosystem II reaction centre I protein (PSII 4.8 kDa protein) | - | Family |
| E [auth H] | PF00737 | Photosystem II 10 kDa phosphoprotein (PsbH) | Photosystem II 10 kDa phosphoprotein | - | Family |
| C [auth E] | PF00283 | Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559) | Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits | - | Family |
| C [auth E] | PF00284 | Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a) | Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit | - | Family |
| B [auth D] | PF00124 | Photosynthetic reaction centre protein (Photo_RC) | Photosynthetic reaction centre protein | - | Family |
| Q [auth A] | PF00124 | Photosynthetic reaction centre protein (Photo_RC) | Photosynthetic reaction centre protein | - | Family |
| P [auth C] | PF00421 | Photosystem II protein (PSII) | Photosystem II protein | - | Family |
| N [auth G] | PF20675 | Maintenance of Photosystem II under High light 2 (MPH2) | Maintenance of Photosystem II under High light 2 | - | Family |
| M [auth Z] | PF01737 | YCF9 (Ycf9) | YCF9 | - | Family |
| L [auth X] | PF06596 | Photosystem II reaction centre X protein (PsbX) (PsbX) | Photosystem II reaction centre X protein (PsbX) | - | Family |
| J [auth T] | PF01405 | Photosystem II reaction centre T protein (PsbT) | Photosystem II reaction centre T protein | The exact function of this protein is unknown. It probably consists of a single transmembrane spanning helix. The Swiss:P37256 protein, appears to be (i) a novel photosystem II subunit and (ii) required for maintaining optimal photosystem II activity ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |














