Annotations: 8KBW

The crystal structure of syn-copalyl diphosphate synthase from Oryza sativa

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth C]	DNA_topoisoIV	e8kbwC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
D	DNA_topoisoIV	e8kbwD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
E [auth F]	DNA_topoisoIV	e8kbwF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
F [auth A]	DNA_topoisoIV	e8kbwA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
C [auth E]	DNA_topoisoIV	e8kbwE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
A [auth B]	DNA_topoisoIV	e8kbwB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth C], C [auth E], D, E [auth F], A [auth B], B [auth C], C [auth E], D, E [auth F], F [auth A]	PF01397	Terpene synthase, N-terminal domain (Terpene_synth)	Terpene synthase, N-terminal domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth C], C [auth E], D, E [auth F], A [auth B], B [auth C], C [auth E], D, E [auth F], F [auth A]	Syn-copalyl diphosphate synthase, chloroplastic	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding carbon-oxygen lyase activity, acting on phosphates terpene synthase activity lyase activity catalytic activity carbon-oxygen lyase activity intramolecular lyase activity isomerase activity syn-copalyl diphosphate synthase activity	diterpenoid metabolic process gibberellin metabolic process small molecule biosynthetic process oxoacid metabolic process isoprenoid biosynthetic process gibberellin biosynthetic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process terpenoid biosynthetic process carboxylic acid biosynthetic process diterpenoid biosynthetic process biosynthetic process small molecule metabolic process diterpenoid metabolic process gibberellin metabolic process small molecule biosynthetic process oxoacid metabolic process isoprenoid biosynthetic process gibberellin biosynthetic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process terpenoid biosynthetic process carboxylic acid biosynthetic process diterpenoid biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process terpenoid metabolic process isoprenoid metabolic process lipid metabolic process response to stimulus defense response response to stress	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth C], C [auth E], D, E [auth F], A [auth B], B [auth C], C [auth E], D, E [auth F], F [auth A]	IPR001906	Terpene synthase, N-terminal domain	Domain
A [auth B], B [auth C], C [auth E], D, E [auth F], A [auth B], B [auth C], C [auth E], D, E [auth F], F [auth A]	IPR008949	Isoprenoid synthase domain superfamily	Homologous Superfamily
A [auth B], B [auth C], C [auth E], D, E [auth F], A [auth B], B [auth C], C [auth E], D, E [auth F], F [auth A]	IPR036965	Terpene synthase, N-terminal domain superfamily	Homologous Superfamily
A [auth B], B [auth C], C [auth E], D, E [auth F], A [auth B], B [auth C], C [auth E], D, E [auth F], F [auth A]	IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	Homologous Superfamily
A [auth B], B [auth C], C [auth E], D, E [auth F], A [auth B], B [auth C], C [auth E], D, E [auth F], F [auth A]	IPR050148	Terpene synthase-like	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8KBW | pdb_00008kbw

The crystal structure of syn-copalyl diphosphate synthase from Oryza sativa

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage