Annotations: 8KB6

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00229	TNF(Tumour Necrosis Factor) family (TNF)	TNF(Tumour Necrosis Factor) family		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Tumor necrosis factor	protein binding binding molecular function activator activity signaling receptor binding death receptor agonist activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity enzyme binding protease binding cytokine receptor binding tumor necrosis factor receptor superfamily binding tumor necrosis factor receptor binding protein binding binding molecular function activator activity signaling receptor binding death receptor agonist activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity enzyme binding protease binding cytokine receptor binding tumor necrosis factor receptor superfamily binding tumor necrosis factor receptor binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding identical protein binding cytokine activity	regulation of biosynthetic process regulation of nitric oxide biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process reactive nitrogen species metabolic process nitric oxide metabolic process positive regulation of metabolic process nitric oxide biosynthetic process biosynthetic process positive regulation of biosynthetic process cellular process metabolic process regulation of biosynthetic process regulation of nitric oxide biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process reactive nitrogen species metabolic process nitric oxide metabolic process positive regulation of metabolic process nitric oxide biosynthetic process biosynthetic process positive regulation of biosynthetic process cellular process metabolic process regulation of nitric oxide metabolic process positive regulation of nitric oxide biosynthetic process regulation of metabolic process positive regulation of cellular process cellular component disassembly positive regulation of cellular component organization regulation of cellular component organization protein-containing complex organization protein-containing complex disassembly regulation of protein-containing complex disassembly cellular component organization cellular component organization or biogenesis positive regulation of protein-containing complex disassembly positive regulation of protein localization to plasma membrane regulation of localization cellular localization regulation of protein localization localization intracellular protein localization regulation of protein localization to membrane positive regulation of protein localization to cell periphery protein localization to cell periphery protein localization to plasma membrane positive regulation of protein localization to membrane regulation of protein localization to cell periphery localization within membrane protein localization to membrane regulation of cellular localization macromolecule localization positive regulation of protein localization regulation of protein localization to plasma membrane extracellular matrix organization extracellular structure organization external encapsulating structure organization multicellular organismal process regulation of immune effector process response to stimulus negative regulation of biological process cytokine production negative regulation of cellular process regulation of cytokine production regulation of immune system process regulation of multicellular organismal process cytokine production involved in immune response negative regulation of macromolecule metabolic process production of molecular mediator of immune response negative regulation of cytokine production involved in immune response regulation of cytokine production involved in immune response immune response negative regulation of metabolic process negative regulation of immune effector process negative regulation of cytokine production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process immune effector process regulation of gene expression negative regulation of production of molecular mediator of immune response negative regulation of gene expression negative regulation of immune system process negative regulation of biosynthetic process immune system process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of production of molecular mediator of immune response negative regulation of multicellular organismal process positive regulation of DNA-templated transcription RNA metabolic process positive regulation of miRNA transcription positive regulation of miRNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process miRNA transcription regulation of miRNA metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process miRNA metabolic process regulation of RNA biosynthetic process primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of DNA-templated transcription regulation of miRNA transcription positive regulation of interleukin-8 production interleukin-8 production positive regulation of gene expression positive regulation of multicellular organismal process positive regulation of cytokine production regulation of interleukin-8 production cellular response to stimulus signaling intracellular signal transduction cell communication JNK cascade intracellular signaling cassette MAPK cascade signal transduction positive regulation of cell adhesion regulation of cell adhesion positive regulation of cell-cell adhesion heterotypic cell-cell adhesion cell adhesion cell-cell adhesion positive regulation of heterotypic cell-cell adhesion regulation of cell-cell adhesion regulation of heterotypic cell-cell adhesion defense response response to stress inflammatory response to wounding inflammatory response response to wounding negative regulation of RNA biosynthetic process transcription by RNA polymerase II negative regulation of nucleobase-containing compound metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of RNA metabolic process cell activation myeloid leukocyte activation leukocyte activation macrophage activation leukocyte activation involved in inflammatory response microglial cell activation glial cell activation neuroinflammatory response positive regulation of cell communication trans-synaptic signaling regulation of signaling modulation of chemical synaptic transmission positive regulation of synaptic transmission cell-cell signaling chemical synaptic transmission synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication positive regulation of signaling positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction regulation of signal transduction positive regulation of response to stimulus regulation of intracellular signal transduction positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of response to stimulus regulation of canonical NF-kappaB signal transduction negative regulation of extrinsic apoptotic signaling pathway in absence of ligand signal transduction in absence of ligand negative regulation of signaling regulation of programmed cell death negative regulation of cell communication extrinsic apoptotic signaling pathway negative regulation of signal transduction in absence of ligand negative regulation of extrinsic apoptotic signaling pathway negative regulation of apoptotic signaling pathway extrinsic apoptotic signaling pathway in absence of ligand cell surface receptor signaling pathway negative regulation of response to stimulus negative regulation of programmed cell death regulation of apoptotic process cell death negative regulation of signal transduction regulation of extrinsic apoptotic signaling pathway apoptotic signaling pathway negative regulation of apoptotic process regulation of extrinsic apoptotic signaling pathway in absence of ligand apoptotic process programmed cell death regulation of apoptotic signaling pathway negative regulation of cellular component organization negative regulation of protein-containing complex disassembly calcineurin-NFAT signaling cascade regulation of calcineurin-mediated signaling positive regulation of calcineurin-NFAT signaling cascade regulation of calcium-mediated signaling positive regulation of calcium-mediated signaling regulation of calcineurin-NFAT signaling cascade positive regulation of calcineurin-mediated signaling calcium-mediated signaling calcineurin-mediated signaling positive regulation of apoptotic signaling pathway positive regulation of programmed cell death positive regulation of extrinsic apoptotic signaling pathway positive regulation of apoptotic process regulation of synapse organization cell junction organization regulation of synapse structure or activity synapse organization regulation of biological quality bicellular tight junction assembly tight junction organization cellular component biogenesis cellular component assembly negative regulation of cell junction assembly cell junction assembly cell-cell junction assembly cell-cell junction organization regulation of bicellular tight junction assembly apical junction assembly regulation of cellular component biogenesis regulation of cell junction assembly tight junction assembly negative regulation of bicellular tight junction assembly developmental process regulation of developmental process blood microparticle formation positive regulation of developmental process anatomical structure morphogenesis regulation of blood microparticle formation anatomical structure formation involved in morphogenesis anatomical structure development positive regulation of blood microparticle formation cellular developmental process macrophage derived foam cell differentiation regulation of cell differentiation foam cell differentiation positive regulation of cell differentiation cell differentiation regulation of macrophage derived foam cell differentiation positive regulation of macrophage derived foam cell differentiation regulation of amide metabolic process amyloid precursor protein catabolic process positive regulation of protein metabolic process regulation of amyloid-beta formation positive regulation of amyloid-beta formation regulation of amyloid precursor protein catabolic process amyloid-beta metabolic process amide metabolic process protein metabolic process amyloid precursor protein metabolic process amyloid-beta formation regulation of protein metabolic process positive regulation of amide metabolic process positive regulation of amyloid precursor protein catabolic process positive regulation of phosphorylation regulation of catalytic activity regulation of transferase activity positive regulation of phosphate metabolic process regulation of MAP kinase activity positive regulation of protein serine/threonine kinase activity phosphate-containing compound metabolic process phosphorus metabolic process protein modification process positive regulation of protein phosphorylation positive regulation of MAP kinase activity protein phosphorylation positive regulation of phosphorus metabolic process phosphorylation positive regulation of MAPK cascade regulation of MAPK cascade regulation of molecular function positive regulation of kinase activity regulation of kinase activity regulation of protein serine/threonine kinase activity macromolecule modification regulation of phosphorus metabolic process regulation of protein modification process regulation of protein phosphorylation positive regulation of molecular function positive regulation of protein modification process positive regulation of protein kinase activity positive regulation of catalytic activity regulation of protein kinase activity regulation of phosphorylation biological process involved in interspecies interaction between organisms response to other organism response to type II interferon response to cytokine defense response to symbiont response to external stimulus cellular response to type II interferon response to biotic stimulus response to peptide response to chemical defense response to other organism innate immune response cellular response to cytokine stimulus response to external biotic stimulus regulation of response to external stimulus angiogenesis regulation of vasculature development regulation of response to wounding multicellular organism development tube morphogenesis vascular wound healing regulation of response to stress regulation of anatomical structure morphogenesis system development blood vessel development wound healing regulation of multicellular organismal development blood vessel morphogenesis tube development negative regulation of blood vessel morphogenesis negative regulation of developmental process negative regulation of wound healing angiogenesis involved in wound healing negative regulation of angiogenesis negative regulation of response to wounding vasculature development circulatory system development negative regulation of vasculature development regulation of angiogenesis negative regulation of response to external stimulus regulation of wound healing negative regulation of vascular wound healing regulation of vascular wound healing cellular response to chemical stimulus cellular response to nicotine response to nicotine immunoglobulin production regulation of immunoglobulin production regulation of non-canonical NF-kappaB signal transduction non-canonical NF-kappaB signal transduction positive regulation of non-canonical NF-kappaB signal transduction negative regulation of viral genome replication viral life cycle negative regulation of viral process regulation of viral process regulation of viral life cycle viral genome replication viral process regulation of viral genome replication myeloid leukocyte differentiation hemopoiesis cell development myeloid cell differentiation osteoclast differentiation leukocyte differentiation regulation of cytokine production involved in inflammatory response production of molecular mediator involved in inflammatory response cytokine production involved in inflammatory response positive regulation of cytokine production involved in inflammatory response positive regulation of nervous system development positive regulation of cell population proliferation regulation of neurogenesis regulation of gliogenesis positive regulation of glial cell proliferation positive regulation of gliogenesis regulation of cell development regulation of nervous system development neurogenesis regulation of glial cell proliferation gliogenesis positive regulation of neurogenesis cell population proliferation positive regulation of cell development nervous system development regulation of cell population proliferation glial cell proliferation negative regulation of cell population proliferation endothelial cell proliferation negative regulation of endothelial cell proliferation regulation of endothelial cell proliferation regulation of epithelial cell proliferation epithelial cell proliferation negative regulation of epithelial cell proliferation regulation of type II interferon production type II interferon production positive regulation of type II interferon production leukocyte tethering or rolling leukocyte cell-cell adhesion leukocyte migration leukocyte adhesion to vascular endothelial cell cellular extravasation cell migration cell motility endothelial cell apoptotic process positive regulation of epithelial cell proliferation regulation of synoviocyte proliferation synoviocyte proliferation positive regulation of synoviocyte proliferation regulation of steroid biosynthetic process steroid metabolic process regulation of lipid metabolic process lipid biosynthetic process vitamin biosynthetic process vitamin D biosynthetic process positive regulation of vitamin metabolic process regulation of small molecule metabolic process positive regulation of lipid metabolic process small molecule metabolic process regulation of vitamin metabolic process steroid biosynthetic process small molecule biosynthetic process positive regulation of vitamin D biosynthetic process regulation of steroid metabolic process vitamin D metabolic process regulation of vitamin D biosynthetic process vitamin metabolic process positive regulation of steroid biosynthetic process positive regulation of lipid biosynthetic process fat-soluble vitamin biosynthetic process positive regulation of steroid metabolic process regulation of lipid biosynthetic process positive regulation of small molecule metabolic process lipid metabolic process interleukin-6 production regulation of interleukin-6 production negative regulation of interleukin-6 production positive regulation of chronic inflammatory response regulation of defense response chronic inflammatory response regulation of chronic inflammatory response to antigenic stimulus inflammatory response to antigenic stimulus positive regulation of response to external stimulus positive regulation of inflammatory response positive regulation of immune response positive regulation of chronic inflammatory response to antigenic stimulus positive regulation of immune system process regulation of chronic inflammatory response regulation of inflammatory response to antigenic stimulus chronic inflammatory response to antigenic stimulus regulation of inflammatory response positive regulation of inflammatory response to antigenic stimulus positive regulation of defense response regulation of immune response positive regulation of leukocyte cell-cell adhesion positive regulation of leukocyte adhesion to vascular endothelial cell regulation of leukocyte adhesion to vascular endothelial cell positive regulation of leukocyte adhesion to arterial endothelial cell regulation of leukocyte adhesion to arterial endothelial cell leukocyte adhesion to arterial endothelial cell regulation of leukocyte cell-cell adhesion neuron apoptotic process positive regulation of neuron apoptotic process regulation of neuron apoptotic process response to ionizing radiation cellular response to ionizing radiation response to radiation response to abiotic stimulus cellular response to radiation cellular response to abiotic stimulus cellular response to environmental stimulus necroptotic process programmed necrotic cell death necroptotic signaling pathway extrinsic apoptotic signaling pathway via death domain receptors interleukin-1 production regulation of interleukin-1 beta production positive regulation of interleukin-1 beta production positive regulation of interleukin-1 production regulation of interleukin-1 production interleukin-1 beta production monosaccharide metabolic process carbohydrate metabolic process hexose metabolic process glucose metabolic process chemokine (C-X-C motif) ligand 2 production regulation of chemokine (C-X-C motif) ligand 2 production positive regulation of chemokine (C-X-C motif) ligand 2 production regulation of chemokine production chemokine production positive regulation of chemokine production positive regulation of JNK cascade regulation of JNK cascade macrophage activation involved in immune response cell activation involved in immune response myeloid cell activation involved in immune response leukocyte activation involved in immune response establishment of protein localization nitrogen compound transport regulation of hormone secretion regulation of peptide secretion transport hormone secretion protein localization to extracellular region peptide secretion regulation of secretion by cell secretion by cell amide transport signal release regulation of peptide hormone secretion regulation of transport secretion regulation of hormone levels regulation of peptide transport regulation of establishment of protein localization establishment of protein localization to extracellular region export from cell regulation of protein transport protein secretion establishment of localization regulation of protein secretion regulation of secretion peptide transport protein transport regulation of insulin secretion peptide hormone secretion hormone transport insulin secretion negative regulation of locomotion regulation of cell motility regulation of blood vessel endothelial cell migration endothelial cell migration negative regulation of endothelial cell migration negative regulation of blood vessel endothelial cell migration regulation of locomotion regulation of cell migration regulation of endothelial cell migration negative regulation of cell motility blood vessel endothelial cell migration locomotion negative regulation of cell migration positive regulation of DNA-binding transcription factor activity positive regulation of NF-kappaB transcription factor activity regulation of DNA-binding transcription factor activity cellular response to acid chemical cellular response to amino acid stimulus response to acid chemical response to amino acid membrane lipid metabolic process regulation of membrane lipid metabolic process positive regulation of protein localization to cell surface protein localization to cell surface regulation of protein localization to cell surface hexose transmembrane transport D-glucose import carbohydrate transport negative regulation of transport negative regulation of transmembrane transport negative regulation of D-glucose import regulation of D-glucose import negative regulation of D-glucose transmembrane transport transmembrane transport regulation of transmembrane transport D-glucose transmembrane transport regulation of D-glucose transmembrane transport monosaccharide transmembrane transport carbohydrate transmembrane transport cytokine-mediated signaling pathway cellular response to tumor necrosis factor tumor necrosis factor-mediated signaling pathway response to tumor necrosis factor positive regulation of JUN kinase activity regulation of JUN kinase activity positive regulation of organelle organization positive regulation of podosome assembly membraneless organelle assembly positive regulation of protein-containing complex assembly regulation of protein-containing complex assembly regulation of podosome assembly protein-containing complex assembly organelle assembly podosome assembly positive regulation of cellular component biogenesis regulation of organelle organization organelle organization regulation of organelle assembly positive regulation of organelle assembly negative regulation of catabolic process lipid catabolic process catabolic process regulation of catabolic process regulation of lipid catabolic process negative regulation of lipid metabolic process negative regulation of lipid catabolic process negative regulation of branching involved in lung morphogenesis branching morphogenesis of an epithelial tube respiratory tube development regulation of branching involved in lung morphogenesis lung morphogenesis lung development respiratory system development animal organ morphogenesis regulation of morphogenesis of an epithelium epithelial tube morphogenesis regulation of morphogenesis of a branching structure epithelium development animal organ development morphogenesis of an epithelium tissue development tissue morphogenesis morphogenesis of a branching structure negative regulation of morphogenesis of an epithelium epithelial tube branching involved in lung morphogenesis morphogenesis of a branching epithelium positive regulation of membrane protein ectodomain proteolysis macromolecule catabolic process regulation of proteolysis proteolysis membrane protein proteolysis membrane protein ectodomain proteolysis regulation of membrane protein ectodomain proteolysis protein catabolic process positive regulation of protein catabolic process positive regulation of catabolic process positive regulation of proteolysis regulation of protein catabolic process positive regulation of transcription by RNA polymerase II regulation of endothelial cell apoptotic process humoral immune response phosphatidylinositol 3-kinase/protein kinase B signal transduction vascular endothelial growth factor production positive regulation of interleukin-6 production muscle structure development negative regulation of myoblast differentiation regulation of myoblast differentiation negative regulation of cell differentiation myoblast differentiation regulation of osteoblast differentiation negative regulation of osteoblast differentiation osteoblast differentiation ossification gland development salivary gland development gland morphogenesis epithelial cell proliferation involved in salivary gland morphogenesis salivary gland morphogenesis exocrine system development positive regulation of establishment of protein localization positive regulation of protein transport positive regulation of transport digestive system development embryo development digestive tract development embryonic organ development embryonic digestive tract development adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains regulation of humoral immune response lymphocyte mediated immunity positive regulation of leukocyte mediated immunity regulation of humoral immune response mediated by circulating immunoglobulin positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains positive regulation of lymphocyte mediated immunity positive regulation of B cell mediated immunity humoral immune response mediated by circulating immunoglobulin positive regulation of humoral immune response regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains regulation of immunoglobulin mediated immune response leukocyte mediated immunity positive regulation of immune effector process positive regulation of adaptive immune response positive regulation of immunoglobulin mediated immune response positive regulation of humoral immune response mediated by circulating immunoglobulin regulation of adaptive immune response immunoglobulin mediated immune response adaptive immune response regulation of B cell mediated immunity regulation of leukocyte mediated immunity regulation of lymphocyte mediated immunity B cell mediated immunity regulation of vascular associated smooth muscle cell proliferation positive regulation of vascular associated smooth muscle cell proliferation regulation of smooth muscle cell proliferation smooth muscle cell proliferation positive regulation of smooth muscle cell proliferation muscle cell proliferation vascular associated smooth muscle cell proliferation response to lipid cellular response to lipopolysaccharide response to oxygen-containing compound cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to oxygen-containing compound cellular response to biotic stimulus response to bacterium cellular response to lipid response to molecule of bacterial origin regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of interleukin-33 production regulation of interleukin-33 production interleukin-33 production response to corticosteroid response to hormone response to steroid hormone response to endogenous stimulus response to glucocorticoid cellular response to stress DNA damage response intrinsic apoptotic signaling pathway in response to DNA damage intrinsic apoptotic signaling pathway defense response to virus antiviral innate immune response response to virus epidermis development molting cycle process regulation of hair cycle skin epidermis development hair follicle development hair cycle positive regulation of hair follicle development skin development molting cycle regulation of hair follicle development hair cycle process regulation of establishment of endothelial barrier endothelium development epithelial cell differentiation regulation of epithelial cell differentiation endothelial cell development regulation of endothelial cell development endothelial cell differentiation regulation of endothelial cell differentiation epithelial cell development establishment of endothelial barrier positive regulation of translation protein biosynthetic process post-transcriptional regulation of gene expression translational initiation regulation of translational initiation by iron regulation of translational initiation positive regulation of translational initiation by iron translation regulation of translation positive regulation of translational initiation negative regulation of amyloid-beta clearance amyloid-beta clearance regulation of amyloid-beta clearance reactive oxygen species metabolic process regulation of reactive oxygen species metabolic process branching involved in salivary gland morphogenesis regulation of branching involved in salivary gland morphogenesis regulation of animal organ morphogenesis acute-phase response regulation of heat generation homeostatic process positive regulation of heat generation positive regulation of acute inflammatory response heat generation positive regulation of fever generation acute inflammatory response fever generation multicellular organismal-level homeostasis temperature homeostasis regulation of acute inflammatory response regulation of fever generation defense response to Gram-positive bacterium defense response to bacterium negative regulation of cell cycle negative regulation of mitotic cell cycle mitotic cell cycle regulation of mitotic cell cycle cell cycle regulation of cell cycle regulation of leukocyte differentiation positive regulation of osteoclast differentiation regulation of osteoclast differentiation positive regulation of hemopoiesis regulation of myeloid cell differentiation regulation of myeloid leukocyte differentiation positive regulation of myeloid leukocyte differentiation positive regulation of myeloid cell differentiation regulation of hemopoiesis positive regulation of leukocyte differentiation	membrane-bounded organelle intracellular anatomical structure endosome intracellular vesicle intracellular membrane-bounded organelle recycling endosome endomembrane system intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle cytoplasm vesicle phagocytic cup membrane-bounded organelle intracellular anatomical structure endosome intracellular vesicle intracellular membrane-bounded organelle recycling endosome endomembrane system intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle cytoplasm vesicle phagocytic cup cell periphery plasma membrane membrane extracellular region extracellular space membrane microdomain membrane raft cell surface external side of plasma membrane side of membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR008983	Tumour necrosis factor-like domain superfamily	Homologous Superfamily
A	IPR021184	Tumour necrosis factor, conserved site	Conserved Site
A	IPR006053	Tumour necrosis factor	Family
A	IPR002959	Tumour necrosis factor alpha	Family
A	IPR006052	Tumour necrosis factor domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.