8JZW | pdb_00008jzw

Cystal structure of HP1 in complex with TRIM66 peptide

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth C]		e8jzwC01	A: alpha bundles	X: Helical bundle insertion in helicase domains	H: Helical bundle in Hef helicase	T: Helical bundle in Hef helicase	F:	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth C], B [auth D], D [auth A], E [auth B]	PF01393	Chromo shadow domain (Chromo_shadow)	Chromo shadow domain	This domain is distantly related to Pfam:PF00385. This domain is always found in association with a chromo domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth F], F [auth E]	ASN-SER-GLU-HIS-LYS-ILE-PRO-TYR-VAL-ARG-LEU-GLU-ARG-LEU-LYS-ILE-CYS-ALA	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding	-	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromatin chromosome membrane-bounded organelle nucleus intracellular membrane-bounded organelle
A [auth C], B [auth D], D [auth A], E [auth B]	Chromobox homolog 3 (HP1 gamma homolog, Drosophila)	histone H3K9me2/3 reader activity histone reader activity histone H3 reader activity chromatin-protein adaptor activity protein-macromolecule adaptor activity molecular adaptor activity protein binding binding protein domain specific binding chromatin binding histone H1K26me2 reader activity histone H1 reader activity transcription factor binding transcription coregulator binding histone H3K9me2/3 reader activity histone reader activity histone H3 reader activity chromatin-protein adaptor activity protein-macromolecule adaptor activity molecular adaptor activity protein binding binding protein domain specific binding chromatin binding histone H1K26me2 reader activity histone H1 reader activity transcription factor binding transcription coregulator binding histone H1K26me1 reader activity histone methyltransferase binding enzyme binding identical protein binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process response to ketone response to lipid cellular response to endogenous stimulus response to hormone response to steroid hormone cellular response to ketone cellular response to steroid hormone stimulus cellular response to hormone stimulus response to endogenous stimulus cellular response to dexamethasone stimulus response to glucocorticoid cellular response to glucocorticoid stimulus response to oxygen-containing compound cellular response to oxygen-containing compound cellular response to corticosteroid stimulus response to corticosteroid cellular response to chemical stimulus response to chemical cellular response to lipid response to dexamethasone rhythmic process cellular component organization cellular component biogenesis cellular component assembly chromatin organization chromatin remodeling cellular component organization or biogenesis heterochromatin formation epigenetic regulation of gene expression heterochromatin organization negative regulation of gene expression negative regulation of gene expression, epigenetic	membrane-bounded organelle intracellular organelle organelle envelope cellular anatomical structure intracellular anatomical structure organelle nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system RNA polymerase II transcription regulator complex protein-containing complex nuclear protein-containing complex transcription regulator complex membrane-bounded organelle intracellular organelle organelle envelope cellular anatomical structure intracellular anatomical structure organelle nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system RNA polymerase II transcription regulator complex protein-containing complex nuclear protein-containing complex transcription regulator complex membraneless organelle intracellular membraneless organelle chromatin chromosome senescence-associated heterochromatin focus heterochromatin chromosome, centromeric region chromosomal region chromatin silencing complex chromatin lock complex membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen pericentric heterochromatin organelle inner membrane nuclear membrane membrane nuclear inner membrane organelle membrane cytoskeleton spindle microtubule cytoskeleton condensed chromosome, centromeric region condensed chromosome euchromatin chromosome, telomeric region site of DNA damage

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth F], F [auth E]	IPR001965	Zinc finger, PHD-type	Domain
C [auth F], F [auth E]	IPR000315	B-box-type zinc finger	Domain
C [auth F], F [auth E]	IPR037372	Tripartite motif-containing protein 66, B-box type 1 zinc finger	Domain
C [auth F], F [auth E]	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
C [auth F], F [auth E]	IPR001487	Bromodomain	Domain
C [auth F], F [auth E]	IPR036427	Bromodomain-like superfamily	Homologous Superfamily
C [auth F], F [auth E]	IPR019787	Zinc finger, PHD-finger	Domain
C [auth F], F [auth E]	IPR011011	Zinc finger, FYVE/PHD-type	Homologous Superfamily
C [auth F], F [auth E]	IPR003649	B-box, C-terminal	Domain
C [auth F], F [auth E]	IPR019786	Zinc finger, PHD-type, conserved site	Conserved Site
A [auth C], B [auth D], D [auth A], E [auth B]	IPR023780	Chromo domain	Domain
A [auth C], B [auth D], D [auth A], E [auth B]	IPR016197	Chromo-like domain superfamily	Homologous Superfamily
A [auth C], B [auth D], D [auth A], E [auth B]	IPR023779	Chromo domain, conserved site	Conserved Site
A [auth C], B [auth D], D [auth A], E [auth B]	IPR008251	Chromo shadow domain	Domain
A [auth C], B [auth D], D [auth A], E [auth B]	IPR051219	Heterochromatin-associated chromo domain-containing protein	Family
A [auth C], B [auth D], D [auth A], E [auth B]	IPR038033	Chromobox protein homologue 3, chromo domain	Domain
A [auth C], B [auth D], D [auth A], E [auth B]	IPR000953	Chromo/chromo shadow domain	Domain
A [auth C], B [auth D], D [auth A], E [auth B]	IPR017984	Chromo domain subgroup	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C [auth F], F [auth E]	Pharos: O15016	breast cancer osteosarcoma lung cancer medulloblastoma
A [auth C], B [auth D], D [auth A], E [auth B]	Pharos: Q13185	myopathy osteosarcoma pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma primitive neuroectodermal tumor acute myeloid leukemia atypical teratoid rhabdoid tumor dermatomyositis gastric carcinoma lung adenocarcinoma malignant ependymoma medulloblastoma nasopharyngeal carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm myopathy osteosarcoma pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma primitive neuroectodermal tumor acute myeloid leukemia atypical teratoid rhabdoid tumor dermatomyositis gastric carcinoma lung adenocarcinoma malignant ependymoma medulloblastoma nasopharyngeal carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm plasma cell myeloma psoriasis adenoma breast cancer diabetes mellitus glioblastoma lung cancer malignant glioma metabolic syndrome X oligodendroglioma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia primary hyperoxaluria type 1 rheumatoid arthritis astrocytic tumor Crohn disease esophageal adenocarcinoma large cell medulloblastoma lymphoplasmacytic lymphoma malignant pancreatic neoplasm

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.