8JG9
Cryo-EM structure of the SaCas9-sgRNA-AcrIIA15-promoter DNA dimer
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Cas9 REC domain-like | 8092302 | 3002580 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | His-Me finger endonucleases | 8092303 | 3001893 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ribonuclease H-like | 8092304 | 3000143 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Cas9 BH domain-like | 8048680 | 3002579 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Cas9 PI domain-like | 8092305 | 3002581 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ribonuclease H-like | 8092304 | 3000143 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ribonuclease H-like | 8092304 | 3000143 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | Ribonuclease H-like | 8092304 | 3000143 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | Cas9 REC domain-like | 8092302 | 3002580 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | Ribonuclease H-like | 8092304 | 3000143 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | Cas9 BH domain-like | 8048680 | 3002579 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | Cas9 PI domain-like | 8092305 | 3002581 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | His-Me finger endonucleases | 8092303 | 3001893 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | Ribonuclease H-like | 8092304 | 3000143 | SCOP2B (2022-06-29) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth D] | PF21574 | CRISPR-associated endonuclease Cas9, C-terminal domain (Cas9_PI_C) | CRISPR-associated endonuclease Cas9, C-terminal domain | This domain is found at the C-terminal end of CRISPR-associated endonuclease Cas9 from Staphylococcus aureus (Cas9). This protein adopts a bilobed architecture consisting of a REC lobe and a NUC lobe connected by an arginine-rich bridge helix and a l ... | Domain |
A, C [auth D] | PF18541 | RuvC endonuclease subdomain 3 (RuvC_III) | RuvC endonuclease subdomain 3 | Cas9 proteins are abundant across the bacterial kingdom, but vary widely in both sequence and size. All known Cas9 enzymes contain an HNH domain that cleaves the DNA strand complementary to the guide RNA sequence (target strand), and a RuvC nuclease ... | Domain |
A, C [auth D] | PF13395 | HNH endonuclease (HNH_4) | HNH endonuclease | This HNH nuclease domain is found in CRISPR-related proteins. | Domain |
A, C [auth D] | PF18061 | CRISPR-Cas9 WED domain (CRISPR_Cas9_WED) | CRISPR-Cas9 WED domain | This domain, known as the wedge (WED) domain, is found in Cas9 proteins which are present in Staphylococcus aureus. Cas9 cleaves double-stranded DNA targets with a protospacer adjacent motif (PAM) and complementarity to the guide RNA. The Cas9 WED do ... | Domain |
A, C [auth D] | PF18070 | CRISPR-Cas9 PI domain (Cas9_PI2) | CRISPR-Cas9 PI domain | This domain is found in Cas9 proteins which can be Staphylococcus aureus. Cas9 cleaves double-stranded DNA targets with a protospacer adjacent motif (PAM) and complementarity to the guide RNA. When this domain is combined with the C-terminal domain i ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C [auth D] | IPR036397 | Ribonuclease H superfamily | Homologous Superfamily |
A, C [auth D] | IPR033114 | Cas9-type HNH domain | Domain |
A, C [auth D] | IPR040555 | Cas9, PI domain | Domain |
A, C [auth D] | IPR049473 | CRISPR-associated endonuclease Cas9, PI domain, C-terminal domain | Domain |
A, C [auth D] | IPR041383 | RuvC endonuclease subdomain 3 | Domain |
A, C [auth D] | IPR028629 | CRISPR-associated endonuclease Cas9 | Family |
A, C [auth D] | IPR003615 | HNH nuclease | Domain |
A, C [auth D] | IPR040656 | Cas9, WED domain | Domain |