8J1Z | pdb_00008j1z

The global structure of pre50S related to DbpA in state3


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth f]SCOP2B SuperfamilyRL5-like 8096352 3001709 SCOP2B (2022-06-29)
K [auth n]SCOP2B SuperfamilyTranslational machinery components 8032969 3000571 SCOP2B (2022-06-29)
I [auth k]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8070553 3001045 SCOP2B (2022-06-29)
H [auth j]SCOP2B Superfamily50S Ribosomal protein L14-like 8103358 3000433 SCOP2B (2022-06-29)
G [auth i]SCOP2B SuperfamilyRibosomal protein L13 8096350 3001134 SCOP2B (2022-06-29)
E [auth e]SCOP2B SuperfamilyRibosomal protein L4 8096356 3001146 SCOP2B (2022-06-29)
D [auth d]SCOP2B SuperfamilyTranslational proteins 8032955 3000811 SCOP2B (2022-06-29)
C [auth c]SCOP2B SuperfamilyNucleic acid-binding proteins 8035394 3000135 SCOP2B (2022-06-29)
C [auth c]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8035393 3000334 SCOP2B (2022-06-29)
AA [auth h]SCOP2B SuperfamilyRibosomal protein L9 C-domain 8032958 3000329 SCOP2B (2022-06-29)
AA [auth h]SCOP2B SuperfamilyL9 N-domain-like 8032960 3000338 SCOP2B (2022-06-29)
Z [auth 2]SCOP2B SuperfamilyL35p-like 8035388 3000790 SCOP2B (2022-06-29)
X [auth 0]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096362 3001320 SCOP2B (2022-06-29)
W [auth z]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096380 3001320 SCOP2B (2022-06-29)
V [auth y]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8096372 3001378 SCOP2B (2022-06-29)
U [auth x]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8096370 3000713 SCOP2B (2022-06-29)
T [auth w]SCOP2B SuperfamilyL28p-like 8035424 3001966 SCOP2B (2022-06-29)
S [auth v]SCOP2B SuperfamilyRibosomal L27 protein-like 8096338 3000539 SCOP2B (2022-06-29)
R [auth u]SCOP2B SuperfamilyRibosomal protein L25-like 8042538 3001161 SCOP2B (2022-06-29)
Q [auth t]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096358 3000334 SCOP2B (2022-06-29)
P [auth s]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8035415 3000210 SCOP2B (2022-06-29)
O [auth r]SCOP2B SuperfamilyRibosomal protein L22 8096336 3001078 SCOP2B (2022-06-29)
N [auth q]SCOP2B Superfamilyl21p-like 8096354 3002005 SCOP2B (2022-06-29)
M [auth p]SCOP2B SuperfamilyRibosomal protein L20 8096382 3000563 SCOP2B (2022-06-29)
L [auth o]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096364 3000334 SCOP2B (2022-06-29)
J [auth m]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8035409 3000995 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
Z [auth 2]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
Y [auth 1]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
X [auth 0]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth b]5S rRNA---
F [auth f]50S ribosomal protein L5
K [auth n]50S ribosomal protein L18
I [auth k]50S ribosomal protein L15
H [auth j]50S ribosomal protein L14
G [auth i]50S ribosomal protein L13
E [auth e]50S ribosomal protein L4
D [auth d]50S ribosomal protein L3
C [auth c]50S ribosomal protein L2
AA [auth h]50S ribosomal protein L9
Z [auth 2]50S ribosomal protein L35
Y [auth 1]50S ribosomal protein L34
X [auth 0]50S ribosomal protein L33
W [auth z]50S ribosomal protein L32
V [auth y]50S ribosomal protein L30
U [auth x]50S ribosomal protein L29
T [auth w]50S ribosomal protein L28
S [auth v]50S ribosomal protein L27
R [auth u]50S ribosomal protein L25
Q [auth t]50S ribosomal protein L24
P [auth s]50S ribosomal protein L23
O [auth r]50S ribosomal protein L22
N [auth q]50S ribosomal protein L21
M [auth p]50S ribosomal protein L20
L [auth o]50S ribosomal protein L19
J [auth m]50S ribosomal protein L17
A [auth a]23S rRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
F [auth f]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
F [auth f]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
F [auth f]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
F [auth f]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
F [auth f]IPR002132Large ribosomal subunit protein uL5Family
F [auth f]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
K [auth n]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
K [auth n]IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
I [auth k]IPR021131Large ribosomal subunit protein uL15/eL18Domain
I [auth k]IPR030878Large ribosomal subunit protein uL15Family
I [auth k]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
I [auth k]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
I [auth k]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
H [auth j]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
H [auth j]IPR000218Large ribosomal subunit protein uL14Family
H [auth j]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
H [auth j]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
G [auth i]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
G [auth i]IPR005822Large ribosomal subunit protein uL13Family
G [auth i]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
G [auth i]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
E [auth e]IPR013005Large ribosomal subunit protein uL4-likeFamily
E [auth e]IPR002136Large ribosomal subunit protein uL4Family
E [auth e]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
D [auth d]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
D [auth d]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
D [auth d]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
D [auth d]IPR000597Large ribosomal subunit protein uL3Family
C [auth c]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
C [auth c]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
C [auth c]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
C [auth c]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
C [auth c]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
C [auth c]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
C [auth c]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
C [auth c]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
C [auth c]IPR002171Large ribosomal subunit protein uL2Family
AA [auth h]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
AA [auth h]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
AA [auth h]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
AA [auth h]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
AA [auth h]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
AA [auth h]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
AA [auth h]IPR000244Large ribosomal subunit protein bL9Family
Z [auth 2]IPR021137Large ribosomal subunit protein bL35-likeFamily
Z [auth 2]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
Z [auth 2]IPR001706Large ribosomal subunit protein bL35Family
Z [auth 2]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
Y [auth 1]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
Y [auth 1]IPR000271Large ribosomal subunit protein bL34Family
X [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
X [auth 0]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
X [auth 0]IPR001705Large ribosomal subunit protein bL33Family
X [auth 0]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
W [auth z]IPR002677Large ribosomal subunit protein bL32Family
W [auth z]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
W [auth z]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
V [auth y]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
V [auth y]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
V [auth y]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
V [auth y]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
U [auth x]IPR050063Universal ribosomal protein uL29Family
U [auth x]IPR001854Large ribosomal subunit protein uL29Family
U [auth x]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
U [auth x]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
T [auth w]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
T [auth w]IPR001383Large ribosomal subunit protein bL28, bacteriaFamily
T [auth w]IPR026569Large ribosomal subunit protein bL28Family
T [auth w]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
S [auth v]IPR001684Large ribosomal subunit protein bL27Family
S [auth v]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
R [auth u]IPR020055Ribosomal protein bL25, short-formFamily
R [auth u]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
R [auth u]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
R [auth u]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
R [auth u]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
Q [auth t]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
Q [auth t]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Q [auth t]IPR003256Large ribosomal subunit protein uL24Family
Q [auth t]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
Q [auth t]IPR005824KOWDomain
Q [auth t]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
P [auth s]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
P [auth s]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
P [auth s]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
P [auth s]IPR013025Large ribosomal subunit protein uL23-likeFamily
O [auth r]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
O [auth r]IPR001063Large ribosomal subunit protein uL22Family
O [auth r]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
O [auth r]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
O [auth r]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
N [auth q]IPR028909Large ribosomal subunit protein bL21-likeFamily
N [auth q]IPR001787Large ribosomal subunit protein bL21Family
N [auth q]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
N [auth q]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
M [auth p]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
M [auth p]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
M [auth p]IPR005813Large ribosomal subunit protein bL20Family
L [auth o]IPR001857Large ribosomal subunit protein bL19Family
L [auth o]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
L [auth o]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
L [auth o]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
J [auth m]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
J [auth m]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
J [auth m]IPR000456Large ribosomal subunit protein bL17Family