Annotations: 8IKE

Transcription factors LMX1a mutant-R199A homeobox domain complex with Wnt1 promoter

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Ribosomal_S3Ae	e8ikeC01	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_S3Ae	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C	PF00046	Homeodomain (Homeodomain)	Homeodomain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C	LMX1A factor	DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding double-stranded DNA binding binding nucleic acid binding DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity cation binding ion binding metal ion binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding double-stranded DNA binding binding nucleic acid binding DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity cation binding ion binding metal ion binding small molecule binding transcription cis-regulatory region binding RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription regulatory region nucleic acid binding	developmental process multicellular organismal process head development dopaminergic neuron differentiation cellular developmental process animal organ development brain development nervous system development generation of neurons multicellular organism development neurogenesis central nervous system neuron differentiation central nervous system development neuron differentiation cell differentiation developmental process multicellular organismal process head development dopaminergic neuron differentiation cellular developmental process animal organ development brain development nervous system development generation of neurons multicellular organism development neurogenesis central nervous system neuron differentiation central nervous system development neuron differentiation cell differentiation midbrain development anatomical structure development cellular process animal gross anatomical part developmental process midbrain dopaminergic neuron differentiation system development regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process cellular component organization cell junction organization synapse organization cellular component organization or biogenesis positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromatin chromosome membrane-bounded organelle nucleus intracellular membrane-bounded organelle
B	DNA (5'-D(GPGPAPAPGPAPTPTPAPAPAPTPAPTP*G)-3')	-	-	-
A	DNA (5'-D(CPCPAPTPAPTPTPTPAPAPTPCPTPTP*C)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C	IPR009057	Homeodomain-like superfamily	Homologous Superfamily
C	IPR017970	Homeobox, conserved site	Conserved Site
C	IPR042688	Lmx1a, first LIM domain	Domain
C	IPR001356	Homeodomain	Domain
C	IPR001781	Zinc finger, LIM-type	Domain
C	IPR050453	LIM/homeobox transcription factors	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C	: Q8TE12	atypical teratoid rhabdoid tumor nonsyndromic genetic deafness vestibular neuronitis hearing loss disorder psoriasis X-linked mixed deafness with perilymphatic gusher medulloblastoma schizophrenia

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.