8I2F | pdb_00008i2f

Crystal structure of Bacillus subtilis LytE catalytic domain in complex with IseA

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	NTF2-like	8052402	3000472	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	NTF2-like	8052402	3000472	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Pkinase, ABC1	e8i2fD1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Pkinase, ABC1	ECOD (v294.1)
B	Pkinase, ABC1	e8i2fB1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Pkinase, ABC1	ECOD (v294.1)
C	Pkinase, ABC1	e8i2fC1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Pkinase, ABC1	ECOD (v294.1)
A	Pkinase, ABC1	e8i2fA1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Pkinase, ABC1	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D	PF00877	NlpC/P60 family (NLPC_P60)	NlpC/P60 family	The function of this domain is unknown. It is found in several lipoproteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D	Probable peptidoglycan endopeptidase LytE	peptidoglycan lytic transglycosylase activity peptidoglycan muralytic activity lytic endotransglycosylase activity lyase activity catalytic activity carbon-oxygen lyase activity, acting on polysaccharides carbon-oxygen lyase activity cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity	glycosaminoglycan metabolic process aminoglycan metabolic process peptidoglycan metabolic process carbohydrate derivative metabolic process metabolic process cellular process macromolecule metabolic process proteolysis primary metabolic process protein metabolic process cellular component organization cell wall organization or biogenesis cell wall organization cellular component organization or biogenesis glycosaminoglycan metabolic process aminoglycan metabolic process peptidoglycan metabolic process carbohydrate derivative metabolic process metabolic process cellular process macromolecule metabolic process proteolysis primary metabolic process protein metabolic process cellular component organization cell wall organization or biogenesis cell wall organization cellular component organization or biogenesis external encapsulating structure organization	-
A, C	Uncharacterized protein YoeB	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D	IPR052062	Murein DD-endopeptidase/LD-carboxypeptidase	Family
B, D	IPR000064	Endopeptidase, NLPC/P60 domain	Domain
B, D	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
B, D	IPR036779	LysM domain superfamily	Homologous Superfamily
B, D	IPR018392	LysM domain	Domain
A, C	IPR053749	Bacterial toxin-antitoxin system-associated superfamily	Homologous Superfamily
A, C	IPR031841	DL-endopeptidase inhibitor IseA	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.