8HQU | pdb_00008hqu

Crystal structure of the major sperm protein domain of SCS2 from saccharomyces cerevisiae

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	WD40	e8hquA01	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: WD40	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00635	MSP (Major sperm protein) domain (Motile_Sperm)	MSP (Major sperm protein) domain	Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Vesicle-associated membrane protein-associated protein SCS2	ion binding binding anion binding phosphatidylinositol binding small molecule binding protein binding FFAT motif binding protein domain specific binding protein-membrane adaptor activity protein-macromolecule adaptor activity molecular adaptor activity	regulation of localization regulation of biological process cellular localization regulation of cellular process regulation of transport transport intracellular lipid transport regulation of intracellular lipid transport biological regulation lipid localization intracellular transport lipid transport regulation of lipid transport establishment of localization localization regulation of localization regulation of biological process cellular localization regulation of cellular process regulation of transport transport intracellular lipid transport regulation of intracellular lipid transport biological regulation lipid localization intracellular transport lipid transport regulation of lipid transport establishment of localization localization regulation of cellular localization regulation of lipid localization establishment of localization in cell macromolecule localization cellular process regulation of intracellular transport membrane organization cellular component organization organelle organization endoplasmic reticulum membrane organization cellular component organization or biogenesis endoplasmic reticulum organization endomembrane system organization negative regulation of protein transport establishment of protein localization negative regulation of nucleocytoplasmic transport nucleocytoplasmic transport regulation of protein localization nuclear transport negative regulation of biological process negative regulation of intracellular protein transport regulation of protein localization to nucleus negative regulation of transport negative regulation of protein import into nucleus intercellular transport import into nucleus regulation of protein import into nucleus protein import into nucleus negative regulation of cellular process intracellular protein localization negative regulation of protein localization negative regulation of intracellular transport regulation of establishment of protein localization negative regulation of establishment of protein localization regulation of nucleocytoplasmic transport protein localization to nucleus regulation of protein transport negative regulation of protein localization to nucleus establishment of protein localization to organelle protein transport protein localization to organelle regulation of intracellular protein transport intracellular protein transport organelle inheritance endoplasmic reticulum inheritance lipid biosynthetic process primary metabolic process phospholipid biosynthetic process phospholipid metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process metabolic process phosphorus metabolic process lipid metabolic process phosphatidylinositol metabolic process regulation of dephosphorylation regulation of lipid metabolic process dephosphorylation lipid modification regulation of macromolecule metabolic process regulation of primary metabolic process regulation of phosphatidylinositol dephosphorylation phosphatidylinositol dephosphorylation phospholipid dephosphorylation regulation of phosphorus metabolic process macromolecule metabolic process regulation of metabolic process endoplasmic reticulum-plasma membrane tethering membrane docking endoplasmic reticulum localization organelle localization by membrane tethering organelle localization subtelomeric heterochromatin formation cellular component biogenesis cellular component assembly chromatin organization chromatin remodeling negative regulation of macromolecule metabolic process regulation of biosynthetic process heterochromatin formation epigenetic regulation of gene expression negative regulation of metabolic process heterochromatin organization gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression constitutive heterochromatin formation negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process endoplasmic reticulum polarization catabolic process macroautophagy reticulophagy autophagy process utilizing autophagic mechanism	cellular anatomical structure cellular bud cellular bud tip site of polarized growth nucleus-vacuole junction organelle membrane contact site organelle membrane-bounded organelle intracellular organelle organelle envelope intracellular anatomical structure nuclear envelope nucleus intracellular membrane-bounded organelle cellular anatomical structure cellular bud cellular bud tip site of polarized growth nucleus-vacuole junction organelle membrane contact site organelle membrane-bounded organelle intracellular organelle organelle envelope intracellular anatomical structure nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system nuclear membrane membrane organelle membrane cell periphery plasma membrane organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cytoplasm endoplasmic reticulum membrane cellular bud neck membraneless organelle intracellular membraneless organelle chromosome chromosome, telomeric region chromosomal region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR008962	PapD-like superfamily	Homologous Superfamily
A	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A	IPR000535	Major sperm protein (MSP) domain	Domain
A	IPR016763	Vesicle-associated membrane-protein-associated protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.