8HB2 | pdb_00008hb2

Crystal structure of Caenorhabditis elegans NMAD-1 in complex with ligand II

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Glyco_transf_88	e8hb2A01	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: Glyco_transf_88	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	DNA N6-methyl adenine demethylase	catalytic activity demethylase activity DNA demethylase activity oxidoreductase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen catalytic activity, acting on DNA DNA N6-methyladenine demethylase activity catalytic activity, acting on a nucleic acid 2-oxoglutarate-dependent dioxygenase activity dioxygenase activity cation binding ion binding binding metal ion binding catalytic activity demethylase activity DNA demethylase activity oxidoreductase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen catalytic activity, acting on DNA DNA N6-methyladenine demethylase activity catalytic activity, acting on a nucleic acid 2-oxoglutarate-dependent dioxygenase activity dioxygenase activity cation binding ion binding binding metal ion binding small molecule binding	cellular response to stimulus regulation of cellular process response to stimulus regulation of double-strand break repair positive regulation of biological process regulation of cellular response to stress regulation of primary metabolic process positive regulation of response to stimulus nucleobase-containing compound metabolic process positive regulation of metabolic process positive regulation of DNA repair cellular response to stress response to stress regulation of response to stress cellular response to stimulus regulation of cellular process response to stimulus regulation of double-strand break repair positive regulation of biological process regulation of cellular response to stress regulation of primary metabolic process positive regulation of response to stimulus nucleobase-containing compound metabolic process positive regulation of metabolic process positive regulation of DNA repair cellular response to stress response to stress regulation of response to stress positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process DNA repair double-strand break repair regulation of biological process biological regulation primary metabolic process DNA metabolic process regulation of macromolecule metabolic process positive regulation of double-strand break repair nucleic acid metabolic process regulation of DNA repair positive regulation of DNA metabolic process regulation of response to stimulus DNA damage response metabolic process cellular process macromolecule metabolic process regulation of metabolic process regulation of DNA metabolic process DNA replication sexual reproduction regulation of reproductive process reproductive process fertilization regulation of fertilization positive regulation of fertilization positive regulation of reproductive process positive regulation of organelle organization regulation of cellular component organization positive regulation of cellular component organization meiotic cell cycle process regulation of meiosis I cellular component organization meiosis I positive regulation of cell cycle process meiotic nuclear division cellular component organization or biogenesis cell cycle regulation of cell cycle cell cycle process regulation of meiotic cell cycle regulation of cell cycle process organelle fission meiotic cell cycle positive regulation of nuclear division positive regulation of meiotic cell cycle regulation of organelle organization positive regulation of cell cycle regulation of meiotic nuclear division organelle organization nuclear division meiosis I cell cycle process positive regulation of meiosis I regulation of nuclear division positive regulation of meiotic nuclear division demethylation actomyosin structure organization actin cytoskeleton organization actin filament-based process cytoskeleton organization meiotic chromosome condensation chromosome organization chromosome organization involved in meiotic cell cycle chromosome condensation multicellular organismal process egg-laying behavior multicellular organismal reproductive process regulation of egg-laying behavior regulation of behavior behavior positive regulation of behavior positive regulation of multicellular organismal process positive regulation of egg-laying behavior regulation of multicellular organismal process reproductive behavior regulation of chromosome organization positive regulation of chromosome organization	midbody cellular anatomical structure contractile ring membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR032857	Alpha-ketoglutarate-dependent dioxygenase alkB homologue 4	Family
A, B, C, D	IPR037151	Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.