8GSF | pdb_00008gsf

Echovirus3 empty particle in complex with 6D10 Fab (sideling)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth A]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8096050 3000918 SCOP2B (2022-06-29)
A [auth 1]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8096050 3000918 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth F]e8gsfF1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (v294.1)
H [auth L]e8gsfL1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (v294.1)
I [auth E]e8gsfE1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (v294.1)
G [auth H]e8gsfH1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (v294.1)
F [auth C]e8gsfC1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (v294.1)
C [auth 3]e8gsf31 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (v294.1)
E [auth B]e8gsfB1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (v294.1)
B [auth 2]e8gsf21 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (v294.1)
D [auth A]e8gsfA1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (v294.1)
A [auth 1]e8gsf11 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
J [auth F]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
H [auth L]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
E [auth B]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (utative)
B [auth 2]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (utative)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
H [auth L],
J [auth F]
Light ChainIGKV8 Kappavp1 | vp3SAbDab (2026-03-27)
G [auth H],
I [auth E]
Heavy ChainIGHV1 -vp1 | vp3SAbDab (2026-03-27)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
H [auth L],
J [auth F]
Light chain of 6D10---
G [auth H],
I [auth E]
Heavy chain of 6D10---
C [auth 3],
F [auth C]
VP3
B [auth 2],
E [auth B]
VP0
A [auth 1],
D [auth A]
VP1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth 3],
F [auth C]
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
C [auth 3],
F [auth C]
IPR002527Picornavirus 2B proteinDomain
C [auth 3],
F [auth C]
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
C [auth 3],
F [auth C]
IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
C [auth 3],
F [auth C]
IPR003593AAA+ ATPase domainDomain
C [auth 3],
F [auth C]
IPR003138Picornavirus coat protein VP4Family
C [auth 3],
F [auth C]
IPR000199Peptidase C3A/C3B, picornaviralDomain
C [auth 3],
F [auth C]
IPR001676Picornavirus capsidDomain
C [auth 3],
F [auth C]
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
C [auth 3],
F [auth C]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth 3],
F [auth C]
IPR000081Peptidase C3, picornavirus core protein 2ADomain
C [auth 3],
F [auth C]
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
C [auth 3],
F [auth C]
IPR029053Viral coat protein subunitHomologous Superfamily
C [auth 3],
F [auth C]
IPR009003Peptidase S1, PA clanHomologous Superfamily
C [auth 3],
F [auth C]
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
C [auth 3],
F [auth C]
IPR044067Picornavirales 3C/3C-like protease domainDomain
C [auth 3],
F [auth C]
IPR033703Picornavirus/Calicivirus coat proteinDomain
C [auth 3],
F [auth C]
IPR014838Poliovirus 3A protein-likeDomain
C [auth 3],
F [auth C]
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
C [auth 3],
F [auth C]
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
C [auth 3],
F [auth C]
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
B [auth 2],
E [auth B]
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
B [auth 2],
E [auth B]
IPR002527Picornavirus 2B proteinDomain
B [auth 2],
E [auth B]
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
B [auth 2],
E [auth B]
IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
B [auth 2],
E [auth B]
IPR003593AAA+ ATPase domainDomain
B [auth 2],
E [auth B]
IPR003138Picornavirus coat protein VP4Family
B [auth 2],
E [auth B]
IPR000199Peptidase C3A/C3B, picornaviralDomain
B [auth 2],
E [auth B]
IPR001676Picornavirus capsidDomain
B [auth 2],
E [auth B]
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
B [auth 2],
E [auth B]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth 2],
E [auth B]
IPR000081Peptidase C3, picornavirus core protein 2ADomain
B [auth 2],
E [auth B]
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
B [auth 2],
E [auth B]
IPR029053Viral coat protein subunitHomologous Superfamily
B [auth 2],
E [auth B]
IPR009003Peptidase S1, PA clanHomologous Superfamily
B [auth 2],
E [auth B]
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
B [auth 2],
E [auth B]
IPR044067Picornavirales 3C/3C-like protease domainDomain
B [auth 2],
E [auth B]
IPR033703Picornavirus/Calicivirus coat proteinDomain
B [auth 2],
E [auth B]
IPR014838Poliovirus 3A protein-likeDomain
B [auth 2],
E [auth B]
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
B [auth 2],
E [auth B]
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
B [auth 2],
E [auth B]
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
A [auth 1],
D [auth A]
IPR029053Viral coat protein subunitHomologous Superfamily
A [auth 1],
D [auth A]
IPR001676Picornavirus capsidDomain
A [auth 1],
D [auth A]
IPR033703Picornavirus/Calicivirus coat proteinDomain