Structure of Type VI secretion system cargo delivery vehicle Hcp-VgrG-PAAR
External Resource: Annotation
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| E [auth G] | MIF4G | e8graG1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: MIF4G | ECOD (v295.2) |
| D [auth H] | MIF4G | e8graH1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: MIF4G | ECOD (v295.2) |
| C [auth I] | Phage_base_V | e8graI01 | A: alpha arrays | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: Phage_base_V | ECOD (v295.2) |
| C [auth I] | WD40 | e8graI06 | A: alpha arrays | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: WD40 | ECOD (v295.2) |
| J [auth C] | Glyco_hydro_43 | e8graC1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Glyco_hydro_43 | ECOD (v295.2) |
| I [auth D] | Glyco_hydro_43 | e8graD1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Glyco_hydro_43 | ECOD (v295.2) |
| H [auth E] | Glyco_hydro_43 | e8graE1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Glyco_hydro_43 | ECOD (v295.2) |
| G [auth F] | Glyco_hydro_43 | e8graF1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Glyco_hydro_43 | ECOD (v295.2) |
| F [auth A] | Glyco_hydro_43 | e8graA1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Glyco_hydro_43 | ECOD (v295.2) |
| B | V-set | e8graB1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: V-set | ECOD (v295.2) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| C [auth I], D [auth H], E [auth G] | Type VI secretion system spike protein VgrG | - | - | - |
| Bacterodales T6SS protein TssD (Hcp) | - | - | ||
| A [auth J], K [auth J1], L [auth J2] | Type VI secretion system spike protein Paar | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| C [auth I], D [auth H], E [auth G] | IPR006531 | Gp5/Type VI secretion system Vgr protein, OB-fold domain | Domain |
| C [auth I], D [auth H], E [auth G] | IPR037026 | Vgr protein, OB-fold domain superfamily | Homologous Superfamily |
| IPR041408 | Hemolysin coregulated protein (Hcp) TssD | Family | |
| A [auth J], K [auth J1], L [auth J2] | IPR008727 | PAAR motif | Repeat |














