8G4M
Vaccine-elicited human antibody 2C06 in complex with HIV-1 envelope trimer BG505 DS-SOSIP
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth G] | SCOP2B Superfamily | gp120 core | 8080371 | 3001390 | SCOP2B (2022-06-29) |
E [auth I] | SCOP2B Superfamily | gp120 core | 8080371 | 3001390 | SCOP2B (2022-06-29) |
A [auth C] | SCOP2B Superfamily | gp120 core | 8080371 | 3001390 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | Virus ectodomain | 8085620 | 3001628 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | Virus ectodomain | 8085620 | 3001628 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Virus ectodomain | 8085620 | 3001628 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth G] | PF00516 | e8g4mG2 | A: beta barrels | X: V1/V2 domain in HIV gp120 (From Topology) | H: V1/V2 domain in HIV gp120 (From Topology) | T: V1/V2 domain in HIV gp120 | F: PF00516 | ECOD (1.6) |
C [auth G] | PF00516 | e8g4mG3 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: PF00516 | ECOD (1.6) |
C [auth G] | PF00516 | e8g4mG1 | A: a+b two layers | X: gp120 inner domain (From Topology) | H: gp120 inner domain (From Topology) | T: gp120 inner domain | F: PF00516 | ECOD (1.6) |
E [auth I] | PF00516 | e8g4mI1 | A: beta barrels | X: V1/V2 domain in HIV gp120 (From Topology) | H: V1/V2 domain in HIV gp120 (From Topology) | T: V1/V2 domain in HIV gp120 | F: PF00516 | ECOD (1.6) |
E [auth I] | PF00516 | e8g4mI2 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: PF00516 | ECOD (1.6) |
E [auth I] | PF00516 | e8g4mI3 | A: a+b two layers | X: gp120 inner domain (From Topology) | H: gp120 inner domain (From Topology) | T: gp120 inner domain | F: PF00516 | ECOD (1.6) |
A [auth C] | PF00516 | e8g4mC3 | A: beta barrels | X: V1/V2 domain in HIV gp120 (From Topology) | H: V1/V2 domain in HIV gp120 (From Topology) | T: V1/V2 domain in HIV gp120 | F: PF00516 | ECOD (1.6) |
A [auth C] | PF00516 | e8g4mC2 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: PF00516 | ECOD (1.6) |
A [auth C] | PF00516 | e8g4mC1 | A: a+b two layers | X: gp120 inner domain (From Topology) | H: gp120 inner domain (From Topology) | T: gp120 inner domain | F: PF00516 | ECOD (1.6) |
D [auth B] | PF00517 | e8g4mB1 | A: a+b duplicates or obligate multimers | X: MPER trimer (From Topology) | H: MPER trimer (From Topology) | T: MPER trimer | F: PF00517 | ECOD (1.6) |
B [auth A] | PF00517 | e8g4mA1 | A: a+b duplicates or obligate multimers | X: MPER trimer (From Topology) | H: MPER trimer (From Topology) | T: MPER trimer | F: PF00517 | ECOD (1.6) |
F | PF00517 | e8g4mF1 | A: a+b duplicates or obligate multimers | X: MPER trimer (From Topology) | H: MPER trimer (From Topology) | T: MPER trimer | F: PF00517 | ECOD (1.6) |
K [auth J] | PF07686 | e8g4mJ1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
G [auth D] | PF07686 | e8g4mD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
I [auth H] | PF07686 | e8g4mH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
L [auth K] | PF07686 | e8g4mK1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
H [auth E] | PF07686 | e8g4mE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
J [auth L] | PF07686 | e8g4mL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
G [auth D], I [auth H], K [auth J] | Heavy Chain | IGHV3 | - | envelope glycoprotein gp41 | envelope glycoprotein gp120 | SAbDab (2024-05-31) |
H [auth E], J [auth L], L [auth K] | Light Chain | IGKV3 | Kappa | envelope glycoprotein gp41 | envelope glycoprotein gp120 | SAbDab (2024-05-31) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C], C [auth G], E [auth I] | PF00516 | Envelope glycoprotein GP120 (GP120) | Envelope glycoprotein GP120 | - | Family |
B [auth A], D [auth B], F | PF00517 | Retroviral envelope protein (GP41) | Retroviral envelope protein | - | Family |