8FYI

Structure of HIV-1 BG505 SOSIP-HT1 in complex with one CD4 molecule


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
G [auth Z]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like8054493 3000071 SCOP2B (2022-06-29)
G [auth Z]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like8054739 3000071 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00516e8fyiA1 A: beta barrelsX: V1/V2 domain in HIV gp120 (From Topology)H: V1/V2 domain in HIV gp120 (From Topology)T: V1/V2 domain in HIV gp120F: PF00516ECOD (1.6)
APF00516e8fyiA2 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF00516ECOD (1.6)
APF00516e8fyiA3 A: a+b two layersX: gp120 inner domain (From Topology)H: gp120 inner domain (From Topology)T: gp120 inner domainF: PF00516ECOD (1.6)
BPF00516e8fyiB1 A: beta barrelsX: V1/V2 domain in HIV gp120 (From Topology)H: V1/V2 domain in HIV gp120 (From Topology)T: V1/V2 domain in HIV gp120F: PF00516ECOD (1.6)
BPF00516e8fyiB2 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF00516ECOD (1.6)
BPF00516e8fyiB3 A: a+b two layersX: gp120 inner domain (From Topology)H: gp120 inner domain (From Topology)T: gp120 inner domainF: PF00516ECOD (1.6)
CPF00516e8fyiC3 A: beta barrelsX: V1/V2 domain in HIV gp120 (From Topology)H: V1/V2 domain in HIV gp120 (From Topology)T: V1/V2 domain in HIV gp120F: PF00516ECOD (1.6)
CPF00516e8fyiC2 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF00516ECOD (1.6)
CPF00516e8fyiC1 A: a+b two layersX: gp120 inner domain (From Topology)H: gp120 inner domain (From Topology)T: gp120 inner domainF: PF00516ECOD (1.6)
DPF00517e8fyiD1 A: a+b duplicates or obligate multimersX: MPER trimer (From Topology)H: MPER trimer (From Topology)T: MPER trimerF: PF00517ECOD (1.6)
EPF00517e8fyiE1 A: a+b duplicates or obligate multimersX: MPER trimer (From Topology)H: MPER trimer (From Topology)T: MPER trimerF: PF00517ECOD (1.6)
FPF00517e8fyiF1 A: a+b duplicates or obligate multimersX: MPER trimer (From Topology)H: MPER trimer (From Topology)T: MPER trimerF: PF00517ECOD (1.6)
G [auth Z]PF00047e8fyiZ2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF00047ECOD (1.6)
G [auth Z]PF05790e8fyiZ1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF05790ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Envelope glycoprotein gp160
B, C
Envelope glycoprotein gp160
D, E, F
Envelope glycoprotein gp41---
G [auth Z]T-cell surface glycoprotein CD4

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
G [auth Z]PharosP01730