8FYH | pdb_00008fyh

G4 RNA-mediated PRC2 dimer


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth J]SCOP2B SuperfamilyWD40 repeat-like 8053350 3001694 SCOP2B (2022-06-29)
C [auth D]SCOP2B SuperfamilyWD40 repeat-like 8053350 3001694 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyVEFS box-like 8090819 3002459 SCOP2B (2022-06-29)
A [auth B]SCOP2B SuperfamilyVEFS box-like 8090819 3002459 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth A],
J [auth G]
PF18264CXC domain (preSET_CXC)CXC domainThis domain is found to the N-terminus of the SET domain in the EZH2 protein [1]. It is a zinc binding domain. Domain
D [auth A],
J [auth G]
PF00856SET domain (SET)SET domain- Family
D [auth A],
J [auth G]
PF11616WD repeat binding protein EZH2 (EZH2_WD-Binding)WD repeat binding protein EZH2- Family
D [auth A],
J [auth G]
PF21358Ezh2, MCSS domain (Ezh2_MCSS)Ezh2, MCSS domainThis entry represents the MCSS domain found in the middle region of the Histone-lysine N-methyltransferase EZH2 [1-5]. It makes contacts with the adjacent SANT domain and the Vefs domain from EED. Additionally, this domain contains a zinc-binding mot ...This entry represents the MCSS domain found in the middle region of the Histone-lysine N-methyltransferase EZH2 [1-5]. It makes contacts with the adjacent SANT domain and the Vefs domain from EED. Additionally, this domain contains a zinc-binding motif and contributes two cysteine residues for a second one, formed with two cysteines from the SANT domain [2].
Domain
C [auth D],
I [auth J]
PF12265Histone-binding protein RBBP4 or subunit C of CAF1 complex (CAF1C_H4-bd)Histone-binding protein RBBP4 or subunit C of CAF1 complex- Repeat
C [auth D],
I [auth J]
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
B [auth C],
H [auth I]
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
A [auth B],
G [auth H]
PF23320Polycomb protein SUZ12-like, Zn domain (Zn_SUZ12)Polycomb protein SUZ12-like, Zn domainThis entry represents the C2H2-type zinc finger domain (Zn) of human Polycomb protein SUZ12, a component of the PRC2 complex, which methylates 'Lys-9' and 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene. This ...This entry represents the C2H2-type zinc finger domain (Zn) of human Polycomb protein SUZ12, a component of the PRC2 complex, which methylates 'Lys-9' and 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene. This domain is necessary to mediate stable binding of the TR domain of Jarid2, another component of the PRC2 complex, and the C-terminal domain of EPOP (C17orf96, a scaffold protein that bridges with the elongin BC complex). It shows a beta -sheet and an alpha helix on one side [1]. This entry is often found associated with Pfam:PF09733.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
G4 RNA---
F, L
Zinc finger protein AEBP2
E, K
protein Jumonji isoform X3---
D [auth A],
J [auth G]
Histone-lysine N-methyltransferase EZH2
C [auth D],
I [auth J]
Histone-binding protein RBBP4
B [auth C],
H [auth I]
Polycomb protein EED
A [auth B],
G [auth H]
Polycomb protein SUZ12

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
F, L
IPR013087Zinc finger C2H2-typeDomain
F, L
IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
F, L
IPR052130AEBP2/jing C2H2-type zinc-fingerFamily
D [auth A],
J [auth G]
IPR048358EZH1/2, MCSS domainDomain
D [auth A],
J [auth G]
IPR041343Polycomb repressive complex 2 subunit EZH1/EZH2, tri-helical domainDomain
D [auth A],
J [auth G]
IPR046341SET domain superfamilyHomologous Superfamily
D [auth A],
J [auth G]
IPR001214SET domainDomain
D [auth A],
J [auth G]
IPR045318Histone-lysine N-methyltransferase EZH1/2-likeFamily
D [auth A],
J [auth G]
IPR033467Tesmin/TSO1-like CXC domainDomain
D [auth A],
J [auth G]
IPR044439EZH2, SET domainDomain
D [auth A],
J [auth G]
IPR026489CXC domainDomain
D [auth A],
J [auth G]
IPR041355Pre-SET CXC domainDomain
D [auth A],
J [auth G]
IPR001005SANT/Myb domainDomain
D [auth A],
J [auth G]
IPR021654Histone-lysine N-methyltransferase EZH1/EZH2Family
C [auth D],
I [auth J]
IPR050459WD repeat RBAP46/RBAP48/MSI1Family
C [auth D],
I [auth J]
IPR019775WD40 repeat, conserved siteConserved Site
C [auth D],
I [auth J]
IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
C [auth D],
I [auth J]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
C [auth D],
I [auth J]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
C [auth D],
I [auth J]
IPR022052Histone-binding protein RBBP4-like, N-terminalDomain
C [auth D],
I [auth J]
IPR001680WD40 repeatRepeat
B [auth C],
H [auth I]
IPR019775WD40 repeat, conserved siteConserved Site
B [auth C],
H [auth I]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
B [auth C],
H [auth I]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
B [auth C],
H [auth I]
IPR001680WD40 repeatRepeat
B [auth C],
H [auth I]
IPR051243Polycomb group WD repeat-containing proteinFamily
A [auth B],
G [auth H]
IPR019135Polycomb protein, VEFS-BoxDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
F, L
PharosQ6ZN18
D [auth A],
J [auth G]
PharosQ15910
C [auth D],
I [auth J]
PharosQ09028
B [auth C],
H [auth I]
PharosO75530
A [auth B],
G [auth H]
PharosQ15022