8FRU | pdb_00008fru

60S subunit of the Giardia lamblia 80S ribosome


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth I]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8107186 3000884 SCOP2B (2022-06-29)
E [auth p]SCOP2B SuperfamilyZn-binding ribosomal proteins 8107192 3001320 SCOP2B (2022-06-29)
F [auth D]SCOP2B SuperfamilyTranslational machinery components 8107236 3000571 SCOP2B (2022-06-29)
I [auth J]SCOP2B SuperfamilyRL5-like 8107182 3001709 SCOP2B (2022-06-29)
M [auth N]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8107174 3000210 SCOP2B (2022-06-29)
P [auth R]SCOP2B SuperfamilyRibosomal protein L19 (L19e) 8107180 3000890 SCOP2B (2022-06-29)
S [auth P]SCOP2B SuperfamilyRibosomal protein L22 8107176 3001078 SCOP2B (2022-06-29)
BA [auth e]SCOP2B SuperfamilyRibosomal protein L32e 8107188 3000982 SCOP2B (2022-06-29)
LA [auth m]SCOP2B SuperfamilyZn-binding ribosomal proteins 8107202 3001320 SCOP2B (2022-06-29)
IA [auth c]SCOP2B SuperfamilyL30e-like 8107172 3001739 SCOP2B (2022-06-29)
CA [auth g]SCOP2B SuperfamilyRibosomal protein L34e-like 8107190 3002203 SCOP2B (2022-06-29)
B [auth a]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8107206 3001045 SCOP2B (2022-06-29)
R [auth V]SCOP2B Superfamily50S Ribosomal protein L14-like 8107198 3000433 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth B]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins. Domain
PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
D [auth I]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
D [auth I]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
F [auth D]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
F [auth D]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
F [auth D]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins. Domain
G [auth H]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
G [auth H]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
H [auth G]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
H [auth G]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
I [auth J]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
I [auth J]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
I [auth J]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
J [auth O]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
J [auth O]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
L [auth M]PF01020Ribosomal L40e family (Ribosomal_L40e)Ribosomal L40e familyBovine L40 has been identified as a secondary RNA binding protein [1]. L40 is fused to a ubiquitin protein [2]. Domain
L [auth M]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
M [auth N]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
N [auth Q]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
P [auth R]PF01280Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e)Ribosomal protein L19e, N-terminal domainThis domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. Domain
S [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
S [auth P]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
T [auth X]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
U [auth Y]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
W [auth Z]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
W [auth Z]PF00467KOW motif (KOW)KOW motif- Family
HA [auth U]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
MA [auth A]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
MA [auth A]PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
MA [auth A]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
Z [auth F]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
Z [auth F]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35AeThis entry represents the ribosomal eL33 previously known as L35A, eukaryotic and archaebacterial ribosomal proteins. Domain
V [auth W]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24eDomain
R [auth V]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
O [auth S]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth B]60S ribosomal protein uL3
60S ribosomal protein uL4
D [auth I]60S ribosomal protein uL16
E [auth p]60S ribosomal protein eL43
F [auth D]60S ribosomal protein uL18
G [auth H]60S ribosomal protein uL6
H [auth G]60S ribosomal protein eL8
I [auth J]60S ribosomal protein uL5
J [auth O]60S ribosomal protein uL13
K [auth L]60S ribosomal protein eL13---
L [auth M]60S ribosomal protein eL14
M [auth N]60S ribosomal protein eL15
N [auth Q]60S ribosomal protein eL18
P [auth R]60S ribosomal protein eL19
Q [auth T]60S ribosomal protein eL21
S [auth P]60S ribosomal protein uL22
T [auth X]60S ribosomal protein uL23
U [auth Y]60S ribosomal protein uL24
W [auth Z]60S ribosomal protein eL27
AA [auth d]60S ribosomal protein eL31
BA [auth e]60S ribosomal protein eL32
DA [auth f]60S ribosomal protein eL33
EA [auth i]60S ribosomal protein eL36
GA [auth o]60S ribosomal protein eL42
HA [auth U]60S ribosomal protein eL22
JA [auth j]60S ribosomal protein eL37
KA [auth l]60S ribosomal protein eL39---
LA [auth m]60S ribosomal protein eL40
NA [auth n]60S ribosomal protein eL41---
OA [auth 3]5S rRNA---
PA [auth 4]5.8S rRNA---
QA [auth 1]28S rRNA---
MA [auth A]60S ribosomal protein uL2
IA [auth c]60S ribosomal protein eL30 -
FA [auth k]60S ribosomal protein eL38
CA [auth g]60S ribosomal protein eL34
Z [auth F]60S ribosomal protein uL30
Y [auth h]60S ribosomal protein uL29
X [auth b]60S ribosomal protein eL29
V [auth W]60S ribosomal protein eL24-
B [auth a]60S ribosomal protein uL15
R [auth V]60S ribosomal protein uL14
O [auth S]60S ribosomal protein eL20

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth B]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
A [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
A [auth B]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
A [auth B]IPR000597Large ribosomal subunit protein uL3Family
A [auth B]IPR045077Large ribosomal subunit protein uL3, archaea/eukaryotaFamily
IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
IPR002136Large ribosomal subunit protein uL4Family
IPR013000Large ribosomal subunit protein uL4, eukaryota/archaea, conserved siteConserved Site
IPR045240Large ribosomal subunit protein uL4, eukaryota/archaeaFamily
IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
D [auth I]IPR001197Large ribosomal subunit protein uL16, eukaryota/archaeaFamily
D [auth I]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
D [auth I]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryota/archaeaConserved Site
D [auth I]IPR016180Large ribosomal subunit protein uL16 domainDomain
D [auth I]IPR047873Large ribosomal subunit protein uL16Family
E [auth p]IPR002674Large ribosomal subunit protein eL43Family
E [auth p]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
E [auth p]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
E [auth p]IPR050522Eukaryotic ribosomal protein eL43Family
F [auth D]IPR057268Large ribosomal subunit protein uL18Family
F [auth D]IPR005485Large ribosomal subunit protein uL18, eukaryota/archaeaFamily
F [auth D]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
G [auth H]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
G [auth H]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
G [auth H]IPR000702Large ribosomal subunit protein uL6-likeFamily
H [auth G]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
H [auth G]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
H [auth G]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
H [auth G]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
H [auth G]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
I [auth J]IPR057266Large ribosomal subunit protein uL5, eukaryota/archaeaFamily
I [auth J]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
I [auth J]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
I [auth J]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
I [auth J]IPR002132Large ribosomal subunit protein uL5Family
J [auth O]IPR005822Large ribosomal subunit protein uL13Family
J [auth O]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
J [auth O]IPR005755Large ribosomal subunit protein uL13, eukaryota/archaeaFamily
L [auth M]IPR039660Large ribosomal subunit protein eL14Family
L [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
L [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
L [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
M [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
M [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
M [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
M [auth N]IPR000439Large ribosomal subunit protein eL15Family
N [auth Q]IPR021131Large ribosomal subunit protein uL15/eL18Domain
N [auth Q]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
N [auth Q]IPR000039Large ribosomal subunit protein eL18Family
N [auth Q]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
P [auth R]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
P [auth R]IPR057259Ribosomal protein L19e, N-terminal domainDomain
P [auth R]IPR039547Large ribosomal subunit protein eL19Family
P [auth R]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
P [auth R]IPR057260Ribosomal protein L19e, C-terminal domainDomain
P [auth R]IPR000196Large ribosomal subunit protein eL19 domainDomain
Q [auth T]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
Q [auth T]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
Q [auth T]IPR001147Large ribosomal subunit protein eL21Family
Q [auth T]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
S [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
S [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryota/archaeaFamily
S [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
S [auth P]IPR001063Large ribosomal subunit protein uL22Family
T [auth X]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
T [auth X]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
T [auth X]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
T [auth X]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
T [auth X]IPR013025Large ribosomal subunit protein uL23-likeFamily
U [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryota_archaeaFamily
U [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
U [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
U [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
W [auth Z]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
W [auth Z]IPR005824KOWDomain
W [auth Z]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
W [auth Z]IPR001141Large ribosomal subunit protein eL27Family
W [auth Z]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
AA [auth d]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
AA [auth d]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
AA [auth d]IPR000054Large ribosomal subunit protein eL31Family
BA [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
BA [auth e]IPR001515Large ribosomal subunit protein eL32Family
BA [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
DA [auth f]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
DA [auth f]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
DA [auth f]IPR001780Large ribosomal subunit protein eL33Family
DA [auth f]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
EA [auth i]IPR000509Large ribosomal subunit protein eL36Family
EA [auth i]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
GA [auth o]IPR053708Eukaryotic Ribosomal Large Subunit eL42Homologous Superfamily
GA [auth o]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
GA [auth o]IPR000552Large ribosomal subunit protein eL42Family
HA [auth U]IPR002671Large ribosomal subunit protein eL22Family
HA [auth U]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
JA [auth j]IPR001569Large ribosomal subunit protein eL37Family
JA [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
JA [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
JA [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
LA [auth m]IPR023657Large ribosomal subunit protein eL40, archaeaFamily
LA [auth m]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
LA [auth m]IPR000626Ubiquitin-like domainDomain
LA [auth m]IPR001975Large ribosomal subunit protein eL40 domainDomain
LA [auth m]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
LA [auth m]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
MA [auth A]IPR023672Large ribosomal subunit protein uL2, archaea/eukaryotaFamily
MA [auth A]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
MA [auth A]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
MA [auth A]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
MA [auth A]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
MA [auth A]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
MA [auth A]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
MA [auth A]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
MA [auth A]IPR002171Large ribosomal subunit protein uL2Family
IA [auth c]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
IA [auth c]IPR039109Large ribosomal subunit protein eL30-likeFamily
IA [auth c]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
FA [auth k]IPR002675Large ribosomal subunit protein eL38Family
FA [auth k]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
CA [auth g]IPR008195Large ribosomal subunit protein eL34Family
CA [auth g]IPR038562Large ribosomal subunit protein eL34, C-terminal domain superfamilyHomologous Superfamily
Z [auth F]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
Z [auth F]IPR039699Large ribosomal subunit protein uL30Family
Z [auth F]IPR035808Large ribosomal subunit protein uL30, eukaryota/archaeaDomain
Z [auth F]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
Y [auth h]IPR001854Large ribosomal subunit protein uL29Family
Y [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
Y [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotaFamily
X [auth b]IPR002673Large ribosomal subunit protein eL29Family
V [auth W]IPR000988Large ribosomal subunit protein eL24-related, N-terminalDomain
V [auth W]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
B [auth a]IPR021131Large ribosomal subunit protein uL15/eL18Domain
B [auth a]IPR030878Large ribosomal subunit protein uL15Family
B [auth a]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
B [auth a]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
R [auth V]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
R [auth V]IPR000218Large ribosomal subunit protein uL14Family
R [auth V]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
O [auth S]IPR028877Large ribosomal subunit protein eL20Family
O [auth S]IPR023573Large ribosomal subunit protein eL20 domainDomain
O [auth S]IPR021138Large ribosomal subunit protein eL20, eukaryotaFamily